FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923113_ssr59 microsatellite FC923113_ssr59:59..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.520e-39
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQRGL+ EIISRFE+KGF L A+K V   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+GV+  GRKLIGAT+P  SEPGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKLIGATNPLASEPGTIRGDFAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+  A++HY   KERPFF GL  F++SGPV+AMVWEG+GVI   RKLIGAT P +SEPGTIRGDLAV +GR
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVIASARKLIGATKPLESEPGTIRGDLAVNIGR 112          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.331e-39
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQRGL+ EIISRFE+KGF L A+K +   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+GV+  GRK+IGAT+P  SEPGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVLTGRKIIGATNPLASEPGTIRGDFAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+A+KPDGVQRGL+ EIISR+E KGF LV +K++V S+E A++HY + KE+PFF+GL +F++SGPV+AMVWEG+GV+   RK+IGAT+P  SEPGTIRGD  + +GR
Sbjct:    1 MERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKGVVAAARKIIGATNPLGSEPGTIRGDFGIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQRGL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL +++ SGPV+AMVWEG+GV+T GRK+IGAT+P +S PGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYSDLSAKPFFNGLVDYIISGPVVAMVWEGKGVVTTGRKIIGATNPLESAPGTIRGDYAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CAPAN (Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.638e-38
Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQRGL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV++MVWEG+GV+T GRK+IGAT+P +S PGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVSMVWEGKGVLTTGRKIIGATNPLESAPGTIRGDYAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.752e-38
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFIAIKPDGVQRGL+ +IISRFE KGF LV +KI+  +KE A+KHY   KERPFF+ L EF+ SGP++AMVWEGEGV+   RK+IGAT+P  +EPGTIRGD  + +GR
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLIEFIKSGPLVAMVWEGEGVVASARKIIGATNPLTAEPGTIRGDYGISLGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.752e-38
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME TFI IKPDGVQRGLI EIISRFE+KGF L A+K+V   + FA+KHY DL  +PFF GL +++ SGPV+AMVWEG+ V+T GRK+IGAT+P  SEPGTIRGD AV +GR
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.059e-37
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQRGL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+ V+T GRK+IGAT+P +S PGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFTLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESPPGTIRGDFAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.059e-37
Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME TFI IKPDGVQRGL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+ V+T GRK+IGAT+P +S PGTIRGD A+ +GR
Sbjct:    1 MEHTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESAPGTIRGDFAIDIGR 111          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_SPIOL2.520e-3968.47Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK_SYNS93.291e-3970.00Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK1_MESCR7.331e-3966.67Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDK_ACAM12.133e-3863.96Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK1_TOBAC2.133e-3863.96Nucleoside diphosphate kinase 1 OS=Nicotiana tabac... [more]
NDK_CAPAN3.638e-3863.96Nucleoside diphosphate kinase OS=Capsicum annuum P... [more]
NDK_TRIEI4.752e-3866.67Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK1_SACOF4.752e-3867.57Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK_HELAN1.059e-3763.96Nucleoside diphosphate kinase OS=Helianthus annuus... [more]
NDKB_FLABI1.059e-3763.96Nucleoside diphosphate kinase B OS=Flaveria bident... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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