FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923113_ssr59 microsatellite FC923113_ssr59:59..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_SOYBN (Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.059e-37
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            E+TFI IKPDGVQRGLI EIISRFE+KGF L  +K+V   + FA+KHY DL  +PFF+GL +++ SGPV+AM+WEG+ V+T GRK+IGAT+P +SEPGTIRGD A+ +GR
Sbjct:    3 EQTFIMIKPDGVQRGLIGEIISRFEKKGFYLKGLKLVTVDRPFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGR 112          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.806e-37
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFIAIKPDGVQRGL+  II RFE+KGFKLV +K + PS+E A++HY   +ERPFFNGL EF++SGP++A+V EGEGV+   RKLIGAT+P  +EPGTIRGD  V +GR
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.806e-37
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFIAIKPDGVQRGL+  II RFE+KGFKLV +K + PS+E A++HY   +ERPFFNGL EF++SGP++A+V EGEGV+   RKLIGAT+P  +EPGTIRGD  V +GR
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.080e-37
Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+A+KPDGVQR L+ EII RFE KGFKLV +K++  SK+ A++HY + KE+PFF GL +F++SGPV+AMVWEG+GV+   RK+IGAT+P  SEPGTIRGD  V +GR
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.254e-37
Identity = 70/110 (63.64%), Postives = 90/110 (81.82%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            E+TFI IKPDGVQRGL+ EIISRFE+KGF L  +K V   + FA+KHY DL  +PFF+GL +++ SGPV+AM+WEG+ V+T GRK+IGAT+P +SEPGTIRGD A+ +GR
Sbjct:    3 EQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGR 112          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.862e-37
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQ GL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+ V+T GR++IGAT+P +S PGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQSGLVGEIIGRFEKKGFSLKGLKLLTVDRAFAEKHYADLSSKPFFNGLVEYIVSGPVVAMVWEGKNVVTTGREIIGATNPAESAPGTIRGDFAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.170e-36
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFI IKPDGVQRGL+ E+I RFE KGF LV +K++  SKE A++HY   KERPFF  L EF+ S PV+AMVWEG+GV+   RKLIGAT+P  +EPGTIRGD  V VGR
Sbjct:    1 MERTFIMIKPDGVQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLVEFICSSPVVAMVWEGDGVVASARKLIGATNPLSAEPGTIRGDFGVSVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+AIKPDGVQRGL+  II RFE+KG+ LV +K++  S+E A++HY + K++PFF GL  F++SGPV+AMVWEG GVI   RKLIGAT+P  +EPGT+RGD AV VGR
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+AIKPDGVQRGL+ EII RFE KGF LV +K +  SKE A++HY   +ERPFF  L EF++SGPV+AMVWEG+GVI   RK+IGAT+P  +EPGTIRGD  + +GR
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+AIKPDGVQRGL+ EII RFE KGF LV +K +  SKE A++HY   +ERPFF  L EF++SGPV+AMVWEG+GVI   RK+IGAT+P  +EPGTIRGD  + +GR
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGR 111          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_SOYBN1.059e-3764.55Nucleoside diphosphate kinase 1 OS=Glycine max PE=... [more]
NDK_SYNP61.806e-3766.67Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE71.806e-3766.67Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDK_CYAP43.080e-3763.96Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK1_PEA5.254e-3763.64Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDKA_FLABI6.862e-3762.16Nucleoside diphosphate kinase A OS=Flaveria bident... [more]
NDK_CYAA51.170e-3665.77Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_THEEB1.996e-3663.96Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_ANAVT1.996e-3664.86Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP1.996e-3664.86Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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