FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STRM5 (Nucleoside diphosphate kinase OS=Stenotrophomonas maltophilia (strain R551-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I EI +RFE+ G K+VA K    S+  A+  Y   +ERPFFN L EF+ SGPV+    EGE  +   R L+GAT+P+++ PGTIR D A
Sbjct:    3 LERTLSIIKPDAVAKNVIGEIYARFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVLAHRDLLGATNPKEAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PARD8 (Nucleoside diphosphate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            ME+T + +KP  VQRGLI EI++RFE+KG +L  +K+V  + E   +HY  LKE+PFF  + + +S  PVI   WEG   I   R L G T+ + + PGTIRGD ++ V
Sbjct:    1 MEKTLVILKPCTVQRGLIGEIVTRFEKKGLRLAGMKMVWLTDEILSEHYAHLKEKPFFQRIKDAMSVCPVIVCCWEGVDAIHVVRTLAGTTNGRNAAPGTIRGDYSMSV 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_HALHL (Nucleoside diphosphate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V +  I EI++RFER G ++VA ++V  S E A+  Y   KERPFFN L  F++SGPV+  V EGE  I   R+++GAT+P+++  GT+R D A
Sbjct:    3 VERTLSIIKPDAVAQNAIGEILARFERSGLRVVAARMVRLSTEQAESFYAVHKERPFFNDLVGFMTSGPVMVQVLEGEDAIRKNREIMGATNPKEAAAGTLRHDFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_GEOBB (Nucleoside diphosphate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            MERTF  IKPD V+R +  ++++  E  GFK+V +K +  SK  A+  Y+  KERPFF  LC F+S GPVIA+V E E  I   R L+GAT+P  +E GTIR  L V +
Sbjct:    1 MERTFAIIKPDAVERNVTGKVLAMIEEGGFKIVGMKKIRLSKCQAEGFYYVHKERPFFGDLCAFMSRGPVIALVLEKENAIADWRGLMGATNPANAEAGTIRKALGVSI 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BURCM (Nucleoside diphosphate kinase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG I   R L+GATDP+K+E GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRGDAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BURA4 (Nucleoside diphosphate kinase OS=Burkholderia ambifaria (strain MC40-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG I   R L+GATDP+K+E GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRGDAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STRT2 (Nucleoside diphosphate kinase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=ndk PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 45/106 (42.45%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            M++TF  IKPD V+R LI +++ R ER+GF +  +++++  +E  ++HY  L ++PFF  + EF+ SGP +  +  G GVI   R ++GAT+P  + PGTIRGD A
Sbjct:    1 MQKTFFIIKPDAVKRHLIGQVLDRIERRGFVIERMEMLMLDEERLKEHYAQLADKPFFPSISEFMMSGPAVIGIMSGPGVIKSWRDMMGATNPGDAAPGTIRGDFA 106          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STRT1 (Nucleoside diphosphate kinase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=ndk PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 45/106 (42.45%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            M++TF  IKPD V+R LI +++ R ER+GF +  +++++  +E  ++HY  L ++PFF  + EF+ SGP +  +  G GVI   R ++GAT+P  + PGTIRGD A
Sbjct:    1 MQKTFFIIKPDAVKRHLIGQVLDRIERRGFVIERMEMLMLDEERLKEHYAQLADKPFFPSISEFMMSGPAVIGIMSGPGVIKSWRDMMGATNPGDAAPGTIRGDFA 106          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ROSDO (Nucleoside diphosphate kinase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L  +I ++FE  G ++VA K +  +K  A   Y    ERPF++ LCEF++S PV+  V EGEG I   R+++GAT+P  + PGTIR + A  VG  S
Sbjct:    3 LERTFSIIKPDATRRNLTGKINAKFEEAGLRIVAQKRIHMTKAQAGVFYAVHAERPFYDELCEFMASAPVVVQVLEGEGAIAKNREVMGATNPADAAPGTIRAEFAESVGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_RHOBA (Nucleoside diphosphate kinase OS=Rhodopirellula baltica GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGD 654
            M+RT + +KPD VQR LI +++SRFE KG  +VA+K++  + E +++HY +  E+PF+  L EF++S PV+A+  EG  VI   R ++GAT+  ++ PGT+RGD
Sbjct:    1 MQRTLVLLKPDCVQRRLIGDVLSRFEAKGLHIVAMKLLQVTPELSKQHYAEHVEKPFYPSLEEFITSAPVVAIALEGLEVIRVVRDMLGATNGLQAAPGTLRGD 104          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STRM59.003e-2148.11Nucleoside diphosphate kinase OS=Stenotrophomonas ... [more]
NDK_PARD89.003e-2145.87Nucleoside diphosphate kinase OS=Parabacteroides d... [more]
NDK_HALHL9.003e-2148.11Nucleoside diphosphate kinase OS=Halorhodospira ha... [more]
NDK_GEOBB9.003e-2148.62Nucleoside diphosphate kinase OS=Geobacter bemidji... [more]
NDK_BURCM9.003e-2150.00Nucleoside diphosphate kinase OS=Burkholderia ambi... [more]
NDK_BURA49.003e-2150.00Nucleoside diphosphate kinase OS=Burkholderia ambi... [more]
NDK_STRT21.176e-2042.45Nucleoside diphosphate kinase OS=Streptococcus the... [more]
NDK_STRT11.176e-2042.45Nucleoside diphosphate kinase OS=Streptococcus the... [more]
NDK_ROSDO1.176e-2045.13Nucleoside diphosphate kinase OS=Roseobacter denit... [more]
NDK_RHOBA1.176e-2045.19Nucleoside diphosphate kinase OS=Rhodopirellula ba... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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