FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923113_ssr59 microsatellite FC923113_ssr59:59..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.405e-36
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+AIKPDGVQRGL+ EII RFE KGF LV +K +  SKE A++HY   +ERPFF  L EF++S PV+AMVWEG+GV+   RK+IGAT+P  SEPGTIRGD  + +GR
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.448e-36
Identity = 70/113 (61.95%), Postives = 91/113 (80.53%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRLMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 70/113 (61.95%), Postives = 91/113 (80.53%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 70/113 (61.95%), Postives = 91/113 (80.53%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 70/113 (61.95%), Postives = 91/113 (80.53%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI IKPDGVQRGLI E+I RFE+KGF L  +K++   + FA+KHY DL  + FF+GL +++ SGPV+AM+WEG+ V+  GRK+IGAT+P  SEPGTIRGD A+ +GR
Sbjct:    1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 69/111 (62.16%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFI IKPDGVQR LI EI+ RFE+KGFKLVA+K++  S+E A+KHY  L ++PFF+GL  F+ S PV+AMVWEG  +++  R++IGATDP  + PGTIRGD  V VGR
Sbjct:    1 MERTFIMIKPDGVQRQLIGEIVGRFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLVNFICSSPVVAMVWEGNSIVSTSRQMIGATDPHAAAPGTIRGDYGVSVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SOLLC (Nucleoside diphosphate kinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query:  355 FIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            FI IKPDGVQRGL+ EIISRFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+GV+  GRK+IGAT+P +S  GTIRGD A+ +GR
Sbjct:    1 FIMIKPDGVQRGLVGEIISRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKIIGATNPLESAAGTIRGDFAIDIGR 107          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CHICK (Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = 1
Query:  334 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            AA  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K V  S++  ++HY DLK+RPF+ GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFVHASEDLLKQHYIDLKDRPFYPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 70/113 (61.95%), Postives = 90/113 (79.65%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AHAERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_NOSP73.405e-3663.96Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDKB_PONAB4.448e-3661.95Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDKB_RAT5.809e-3661.95Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKB_MOUSE5.809e-3661.95Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]
NDKB_HUMAN5.809e-3661.95Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDK1_ARATH5.809e-3660.36Nucleoside diphosphate kinase 1 OS=Arabidopsis tha... [more]
NDK_SYNY37.586e-3662.16Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_SOLLC7.586e-3663.55Nucleoside diphosphate kinase (Fragment) OS=Solanu... [more]
NDK_CHICK7.586e-3661.40Nucleoside diphosphate kinase OS=Gallus gallus PE=... [more]
NDKB_BOVIN7.586e-3661.95Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
back to top