FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_TOLAT (Nucleoside diphosphate kinase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            +ERTF  IKPD V + +I EI  RFE  G  ++A K++  S+E A   Y + K +PF++ L +F++SGP++  V EG+  I   R+L+G+TDP+K++ GTIR D A+ V
Sbjct:    3 IERTFSIIKPDAVAKNIIGEIYHRFECAGLHIIAAKMLHLSQEQAAGFYAEHKGKPFYDNLLKFMTSGPIVVQVLEGQDAIRRHRELLGSTDPEKAQAGTIRADHAISV 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SHEWM (Nucleoside diphosphate kinase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  SKE A+  Y +  ERPFF  L  F++SGP++    EGE  +   R ++GAT+P ++ PGTIR D A
Sbjct:    3 IERTFSIIKPDAVAKNNIGAIYNRFETAGLKIIASKMVHLSKEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHRDILGATNPAEAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_POLNA (Nucleoside diphosphate kinase OS=Polaromonas naphthalenivorans (strain CJ2) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I +RFE  G K+VA K+   S+  A+  Y   KERPFF  L  F+ SGPV+    EGEG +   R L+GATDP+K++ GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKVVAAKMTHLSQGEAEAFYAVHKERPFFKDLVSFMISGPVMIQALEGEGAVLKNRDLMGATDPKKADAGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PHOPR (Nucleoside diphosphate kinase OS=Photobacterium profundum GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAV 663
            +E+TF  IKPD V+R LI  I  RFE  G K+VA K+V      AQ  Y + +E+PFFN L EF++SGPV+  V EGE  I   R+L+G T+P+ +  GTIR D A+
Sbjct:    3 IEKTFSIIKPDAVKRNLIGAIYQRFENAGLKIVASKMVHLDATKAQGFYAEHEEKPFFNELVEFMTSGPVMVQVLEGEDAIHRYRELMGTTNPENAACGTIRSDFAL 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PARL1 (Nucleoside diphosphate kinase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD  +R L  +II RFE  G ++VA K +  +K  A+  Y   KERPFFN L  F+ SGPV+  V EGE  +   R+++GAT+P  ++ GTIR D A
Sbjct:    3 LERTFSIIKPDATRRNLTGKIIDRFESAGLRVVASKRIHMTKAQAEGFYAVHKERPFFNDLVSFMISGPVVVQVLEGENAVAKNREIMGATNPANADAGTIRKDFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CAMFF (Nucleoside diphosphate kinase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            ME+T   IKPD V++G++ +II RFE  G ++ A K +  S E A+K Y     RPF+  L EF++SGPV+ MV EG+  +   R+L+GAT+P+++  GTIR D A
Sbjct:    1 MEQTLSIIKPDAVKKGVVGKIIDRFESNGLRIAAAKKLQLSVEDAKKFYEVHAARPFYGELVEFMTSGPVVVMVLEGDNAVVKNRELMGATNPKEAAAGTIRADFA 106          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_AZOSE (Nucleoside diphosphate kinase OS=Azoarcus sp. (strain EbN1) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I  RFE  G K++A K+V  S+  A + Y   KERPFF  L  F+ SGPV+  V EGE  I   R L+GATDP+K++ GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGKIYQRFEDAGLKIIASKMVHLSEREAGQFYAVHKERPFFKDLVSFMISGPVMIQVLEGESAIATNRDLMGATDPKKADAGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_AZOSB (Nucleoside diphosphate kinase OS=Azoarcus sp. (strain BH72) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I  RFE  G K++A K+V  S++ A + Y   KERPF+  L  F++SGPV+    EGE  I   R+L+GATDP+K++ GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGKIYQRFEDAGLKIIAAKMVHLSEQEAGQFYAVHKERPFYKDLVSFMTSGPVMIQCLEGENAIAKNRELMGATDPKKADAGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ACTSZ (Nucleoside diphosphate kinase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 48/106 (45.28%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V+R L+ +I+SRFE  GF++VA+K++  ++  A+  Y + + +PFF+GL E+++S PV+  V E +  +   R LIGATDPQ++  GTIR D A
Sbjct:    3 LERTLSIIKPDAVERNLVGKILSRFEENGFQIVAMKMLRLNQAQAEGFYAEHQGKPFFDGLVEYMTSAPVVVSVLEKDNAVKDYRTLIGATDPQQAAEGTIRKDFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ACIBY (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain AYE) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            +ERT   +KPD V +  I EI +RFE+ G K+VA K+   S+  A+  Y + KER FF  L  F++SGPV+  V EGE  +   R+++GAT+P+++ PGTIR D AV +
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAAPGTIRADFAVSI 111          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_TOLAT2.620e-2044.04Nucleoside diphosphate kinase OS=Tolumonas auensis... [more]
NDK_SHEWM2.620e-2046.23Nucleoside diphosphate kinase OS=Shewanella woodyi... [more]
NDK_POLNA2.620e-2048.11Nucleoside diphosphate kinase OS=Polaromonas napht... [more]
NDK_PHOPR2.620e-2048.60Nucleoside diphosphate kinase OS=Photobacterium pr... [more]
NDK_PARL12.620e-2047.17Nucleoside diphosphate kinase OS=Parvibaculum lava... [more]
NDK_CAMFF2.620e-2045.28Nucleoside diphosphate kinase OS=Campylobacter fet... [more]
NDK_AZOSE2.620e-2049.06Nucleoside diphosphate kinase OS=Azoarcus sp. (str... [more]
NDK_AZOSB2.620e-2047.17Nucleoside diphosphate kinase OS=Azoarcus sp. (str... [more]
NDK_ACTSZ2.620e-2045.28Nucleoside diphosphate kinase OS=Actinobacillus su... [more]
NDK_ACIBY2.620e-2044.95Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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