FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_COXB1 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I SRFE+ G K+++ K+   SK  A+K Y   K+RPF+  L +F++ GPV+  V EGE  I   R+++GAT+P+++ PGTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEKAGLKIISAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CHRVO (Nucleoside diphosphate kinase OS=Chromobacterium violaceum GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   +KPD V + +I +I  RFE  G K+VA K+   S+  A+  Y   KERPFF  L +F+ SGPV+    EGE  +   R+L+GATDP+K+E GTIR D A
Sbjct:    3 IERTLSIVKPDAVAKNVIGKIYDRFESAGLKIVAAKMKQLSRAEAEGFYAVHKERPFFKDLVDFMVSGPVMIQALEGENAVLKNRELMGATDPKKAEAGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BURXL (Nucleoside diphosphate kinase OS=Burkholderia xenovorans (strain LB400) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERT   IKPD V + +I +I +RFE  G K+VA ++V  S+  A+K Y     RPFF  L +F+ SGPV+    EGE  I   R L+GATDP+K+E GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYTRFENAGLKIVASRMVHLSRADAEKFYAVHAARPFFKDLVDFMISGPVVVQALEGENAILKHRDLMGATDPKKAEKGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_YERE8 (Nucleoside diphosphate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKP+ V +  I  I +RFE  GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGPV+  V EGE  +   R ++GAT+P  +  GT+R D A
Sbjct:    3 VERTFSIIKPNAVAKNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPVMIQVLEGENAVQRHRDIMGATNPDNALAGTLRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_TREPS (Nucleoside diphosphate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 44/106 (41.51%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAV 663
            E TF+ +KP  +QR L+ E++SRFERKG  L A++++      A+ HY + +E+PF+  L  +++S PV+A+ ++GE  I+  R L G+T  + ++PGTIRGD A+
Sbjct:    4 ETTFVMLKPGVLQRRLVGEVLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLIAYITSAPVVALAFKGENAISLVRTLCGSTRVEHAQPGTIRGDFAL 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_TREPA (Nucleoside diphosphate kinase OS=Treponema pallidum GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 44/106 (41.51%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAV 663
            E TF+ +KP  +QR L+ E++SRFERKG  L A++++      A+ HY + +E+PF+  L  +++S PV+A+ ++GE  I+  R L G+T  + ++PGTIRGD A+
Sbjct:    4 ETTFVMLKPGVLQRRLVGEVLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLIAYITSAPVVALAFKGENAISLVRTLCGSTRVEHAQPGTIRGDFAL 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STRZP (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain P1031) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 49/117 (41.88%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTSFME 690
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGPV+  V  G  VI   R ++GAT P+++ PGTIRGD A   G    ++
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEVIQ 117          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STRGG (Nucleoside diphosphate kinase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKG-FKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVV 666
            +RT + +KPD V+RGLI EI+ R ERK  +++ A+++        ++HY + K RPF+  L EF+ SGPV+A+V EGE VI   R L G TDP  + PG+IRGD   +
Sbjct:    3 QRTLVLLKPDAVRRGLIGEIVGRIERKADWRITALELRTLDHGTLEQHYGEHKGRPFYEPLMEFMQSGPVVALVAEGERVIEGVRTLAGPTDPIAAAPGSIRGDFGTI 110          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PSEE4 (Nucleoside diphosphate kinase OS=Pseudomonas entomophila (strain L48) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            ++RTF  IKPD V + +I +I +RFE  G K+VA KI   SK  A+  Y +   R FF  L  F++SGPV+  V EGE  I   R+L+GAT+P+++ PGTIR D A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROMH (Nucleoside diphosphate kinase OS=Proteus mirabilis (strain HI4320) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            ++RTF  IKP+ V++ +I  I +RFE  GF +VA K++  ++E A+  Y + K RPFF+GL EF++SGP++  V EGE  I   R L+GAT+P  +  GT+R D A
Sbjct:    3 IQRTFSIIKPNAVKKNVIGAIYNRFESAGFSIVAAKMLHLTREQAEGFYEEHKGRPFFDGLVEFMTSGPIMVQVLEGENAIQRHRDLMGATNPDNALAGTLRADYA 108          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_COXB13.421e-2045.28Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_CHRVO3.421e-2047.17Nucleoside diphosphate kinase OS=Chromobacterium v... [more]
NDK_BURXL3.421e-2048.11Nucleoside diphosphate kinase OS=Burkholderia xeno... [more]
NDK_YERE84.468e-2046.23Nucleoside diphosphate kinase OS=Yersinia enteroco... [more]
NDK_TREPS4.468e-2041.51Nucleoside diphosphate kinase OS=Treponema pallidu... [more]
NDK_TREPA4.468e-2041.51Nucleoside diphosphate kinase OS=Treponema pallidu... [more]
NDK_STRZP4.468e-2041.88Nucleoside diphosphate kinase OS=Streptococcus pne... [more]
NDK_STRGG4.468e-2045.37Nucleoside diphosphate kinase OS=Streptomyces gris... [more]
NDK_PSEE44.468e-2047.17Nucleoside diphosphate kinase OS=Pseudomonas entom... [more]
NDK_PROMH4.468e-2045.28Nucleoside diphosphate kinase OS=Proteus mirabilis... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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