FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_LAWIP (Nucleoside diphosphate kinase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 45/107 (42.06%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAV 663
            M+ TF  IKPD VQR LI  II+  E+  F + A+K++  +++ A+  Y   +ERPFFN L +++ SGP+++++  GE  +T  R+L+GAT+PQ ++ GTIR   A+
Sbjct:    1 MQHTFALIKPDAVQRNLIGAIINMIEKNDFYISAMKMLQMNRQQAEGFYSVHRERPFFNELVDYMISGPIVSLILTGENAVTRYRELMGATNPQNAQEGTIRKSFAI 107          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_KLEP7 (Nucleoside diphosphate kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKP+ V + +I  I SRFE  GFK+V  K++  + E A+  Y + + RPFF+GL EF++SGP++  V EGE  +   R L+GAT+P  +  GT+R D A
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_KLEP3 (Nucleoside diphosphate kinase OS=Klebsiella pneumoniae (strain 342) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKP+ V + +I  I SRFE  GFK+V  K++  + E A+  Y + + RPFF+GL EF++SGP++  V EGE  +   R L+GAT+P  +  GT+R D A
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_JANSC (Nucleoside diphosphate kinase OS=Jannaschia sp. (strain CCS1) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            ++RTF  IKPD  +R L  +I ++FE  G ++VA K +  +   AQ  Y    ERPFF  LCEF+ S P++  V EGE  I   R+++GAT+P  + PGTIR + A+ +G  S
Sbjct:    3 IQRTFSIIKPDATKRNLTGQIAAKFEEAGLRIVASKRIQLTLAQAQAFYGVHSERPFFGELCEFMISEPIVVQVLEGEDAIVKNREVMGATNPADAAPGTIRKEFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_GRABC (Nucleoside diphosphate kinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ndk PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD  +R L   I + FE  G ++VA K V  S+  A+  Y   +ERPFFN L  F+ SGPV+  V EGE  +   R+L+GATDP+K++ GTIR   A
Sbjct:    3 IERTFSIIKPDATRRNLTGRINAVFEENGLRIVAQKRVQLSQAQAEAFYGVHRERPFFNDLVSFMISGPVVVQVLEGENAVARNRELMGATDPKKADAGTIRAQFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CHLAB (Nucleoside diphosphate kinase OS=Chlamydophila abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVG 672
            ME+T   IKPD V +  I EII+ FE+ GF++ A+K++  S + A+  Y   K RPFF  L +F+ SGPV+ MV EG   +   R+++GAT+PQ++ PGTIR      +G
Sbjct:    1 MEQTLSIIKPDSVGKAHIGEIIAIFEKSGFRIAAMKMLHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGNNAVARNREIMGATNPQEAAPGTIRAQFGESIG 110          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUSU (Nucleoside diphosphate kinase OS=Brucella suis GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUSI (Nucleoside diphosphate kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUO2 (Nucleoside diphosphate kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYTVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUMB (Nucleoside diphosphate kinase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LAWIP1.300e-1942.06Nucleoside diphosphate kinase OS=Lawsonia intracel... [more]
NDK_KLEP71.300e-1945.28Nucleoside diphosphate kinase OS=Klebsiella pneumo... [more]
NDK_KLEP31.300e-1945.28Nucleoside diphosphate kinase OS=Klebsiella pneumo... [more]
NDK_JANSC1.300e-1942.48Nucleoside diphosphate kinase OS=Jannaschia sp. (s... [more]
NDK_GRABC1.300e-1947.17Nucleoside diphosphate kinase OS=Granulibacter bet... [more]
NDK_CHLAB1.300e-1943.64Nucleoside diphosphate kinase OS=Chlamydophila abo... [more]
NDK_BRUSU1.300e-1944.25Nucleoside diphosphate kinase OS=Brucella suis GN=... [more]
NDK_BRUSI1.300e-1944.25Nucleoside diphosphate kinase OS=Brucella suis (st... [more]
NDK_BRUO21.300e-1944.25Nucleoside diphosphate kinase OS=Brucella ovis (st... [more]
NDK_BRUMB1.300e-1944.25Nucleoside diphosphate kinase OS=Brucella melitens... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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