FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUC2 (Nucleoside diphosphate kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUAB (Nucleoside diphosphate kinase OS=Brucella abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUA2 (Nucleoside diphosphate kinase OS=Brucella abortus (strain 2308) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUA1 (Nucleoside diphosphate kinase OS=Brucella abortus (strain S19) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP +  V EGE  I   R+++GAT+P  ++ GTIR   A+ +G  S
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_VIBHB (Nucleoside diphosphate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRTS 681
            +ERTF  +KPD V+R LI EI  R E+ G ++VA K+V  ++E A   Y + + +PFF  L EF++SGP++  V EGE  I   R+L+G T+P+++  GTIR D A+ +   S
Sbjct:    3 LERTFSIVKPDAVERNLIGEIYHRIEKAGLRIVAAKMVHLTEEQASGFYAEHEGKPFFPALKEFMTSGPIMVQVLEGEDAIARYRELMGKTNPEEAACGTIRADYALSMRHNS 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SHESW (Nucleoside diphosphate kinase OS=Shewanella sp. (strain W3-18-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SHESR (Nucleoside diphosphate kinase OS=Shewanella sp. (strain MR-7) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SHESM (Nucleoside diphosphate kinase OS=Shewanella sp. (strain MR-4) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SHESA (Nucleoside diphosphate kinase OS=Shewanella sp. (strain ANA-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFA 108          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SHEPC (Nucleoside diphosphate kinase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFA 108          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BRUC21.300e-1944.25Nucleoside diphosphate kinase OS=Brucella canis (s... [more]
NDK_BRUAB1.300e-1944.25Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_BRUA21.300e-1944.25Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_BRUA11.300e-1944.25Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_VIBHB1.698e-1943.36Nucleoside diphosphate kinase OS=Vibrio harveyi (s... [more]
NDK_SHESW1.698e-1945.28Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHESR1.698e-1945.28Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHESM1.698e-1945.28Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHESA1.698e-1945.28Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHEPC1.698e-1945.28Nucleoside diphosphate kinase OS=Shewanella putref... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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