FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.272e-35
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFIAIKPDGVQRGL+  II R E +G++LV +K+V  S+E A+ HY + +ERPFF GL +F++SGPV+AMVW+G+GVI   RKLIG T+P  +EPGTIRGD  + +GR
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGR 111          

HSP 2 Score: 21.1718 bits (43), Expect = 2.272e-35
Identity = 6/9 (66.67%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N++HGSDG
Sbjct:  111 RNLVHGSDG 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K +  S++  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA1_BOVIN (Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 70/113 (61.95%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGLI EII RFE+KGF+LVA+K +  S++  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 69/112 (61.61%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  340 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            E+E T+I IKPDGVQRGL+ EIISRFE+KGFKL  +K+    KE A++HY DL+ +PFF  L ++++SGPV+ M WEG GV+   RKLIGAT+P  +EPGTIRGDLAV  GR
Sbjct:   83 EVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGR 194          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  340 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ++E T+I IKPDGVQRGL+ EIISRFE+KGFKL+ +K+    KE A++HY DLK + F+  L ++++SGPV+ M WEG GV+   RKLIGATDP ++EPGTIRGDLAV  GR
Sbjct:   84 QVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGR 195          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.917e-35
Identity = 67/113 (59.29%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQR L+ EII RFE+KGF+L+A+K++  S++  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.917e-35
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 1
Query:  190 AAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYMLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A V F   L      F     ++ASR  L  + +  +  + L        ++E T+I +KPDG+QRGL+ EIISRFE+KGFKL+ +K+    KE A++HY DL  + FF  L E+++SGPV+ M WEG GV+   RKLIG TDP ++EPGTIRGDLAV  GR
Sbjct:   33 ARVNFRTALAAFRPQFRLFSRNSASRRRLRASSSAESGIF-LPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGR 193          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K +  S++  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K +  S++  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA2_BOVIN (Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S++  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SYNJA2.272e-3561.26Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKA_MOUSE2.883e-3560.18Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDKA1_BOVIN2.883e-3561.95Nucleoside diphosphate kinase A 1 OS=Bos taurus GN... [more]
NDK2_TOBAC2.883e-3561.61Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_SPIOL2.883e-3560.71Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDKA_CANFA4.917e-3559.29Nucleoside diphosphate kinase A OS=Canis familiari... [more]
NDK2_ARATH4.917e-3546.91Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDKA_PONAB6.422e-3560.18Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN6.422e-3560.18Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDKA2_BOVIN6.422e-3561.06Nucleoside diphosphate kinase A 2 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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