FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.095e-34
Identity = 70/110 (63.64%), Postives = 86/110 (78.18%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVG 672
            MERT++ +KPDGVQR LI  I+SRFE+KG+ L A K+V  SKE A+ HY + +ERPFF  L  F++SGPV AMVWEGEGVI   R+LIGAT+P ++ PGTIRGDLAV VG
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGEGVIKAARQLIGATNPSEAAPGTIRGDLAVNVG 110          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.431e-34
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFI +KPDGVQRGL+ EIISRFE++GFKLV +K++  S+E A+ HY + K +PFF GL  F++SGPV+AMVWEG+ VI   R+++GAT+P K++PGTIRG   + VGR
Sbjct:    1 MERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPVVAMVWEGKEVIATAREMMGATNPLKAQPGTIRGTYGIDVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.431e-34
Identity = 66/113 (58.41%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ +I+ RFE+KGF+LVA+K +  S++  ++HY DLK+RPF+ GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.431e-34
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFI +KPDGVQRGL+ +II RFE+KGFKLVA+K    SKE  +KHY DL  RPFF GL  +++SGPV+ MVWEG  V+  GR+++GAT+P  S PGTIRGD  + VGR
Sbjct:    3 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGR 112          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.187e-34
Identity = 68/110 (61.82%), Postives = 85/110 (77.27%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            E+TFIAIKPDGVQRGLI  IISRFE +GFKLVA+K+V P +   ++HY DL ++PFF GL  ++ SGP+ AMVWEG  V+  GR ++GAT+P  S PGTIRGD A+ VGR
Sbjct:    4 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEGRDVVKTGRTILGATNPLASAPGTIRGDFAIDVGR 113          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.161e-34
Identity = 65/110 (59.09%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFI +KPDGVQR LI EI++RFE+KGF+LV  K++  S+E A++HY + KERPFF  L +F++SGPV AMVWEGE VI   R+++G T+PQ++ PGTIRGD  + VG+
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAAPGTIRGDFGLTVGK 112          

HSP 2 Score: 20.7866 bits (42), Expect = 4.161e-34
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  672 KNIIHGSD 695
            KN+IHGSD
Sbjct:  112 KNVIHGSD 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 66/110 (60.00%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL  F++SGPV+AMV+EG+GV+   R +IG T+P  S PG+IRGD  V VGR
Sbjct:    9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGR 118          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 76/172 (44.19%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  160 YSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYMLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            YS+ R     +A +    L    S+      +  +RS     I +P     L++       +++ +I +KPDGVQRGL+ EIISRFE+KGFKL  +K+   SKE A++HY  L ++ FF  L E+++SGPV++M WEG GV+   RKLIGATDP ++EPGTIRGD AV  GR
Sbjct:   28 YSQLRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQ-------VDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGR 192          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME++FI IKPDGVQRGLI +IISRFE+KGF L  +K +   + FAQ+HY DL ++PFF GL E++ SGPV+AMVWEG+ V+  GR++IGAT P ++ PGTIR D AV VGR
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 64/113 (56.64%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +  E+TFIA+KPDGVQRGL+  IISRFE +GFKLVA+K+  P +   +KHY DL  +PFF GL ++++SGP+ AMVWEG+  +  GR ++GAT+P  S PGTIRGD A+ +GR
Sbjct:    2 SNQEQTFIAVKPDGVQRGLVGNIISRFENRGFKLVAMKLTQPGQAHLEKHYEDLNTKPFFAGLIKYMNSGPICAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFALDMGR 114          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACSK1.095e-3463.64Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDK_CARHZ1.431e-3460.36Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDKB_CANFA1.431e-3458.41Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDKA_DROYA1.431e-3461.82Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDK_ASPFU3.187e-3461.82Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDK_GEOKA4.161e-3459.09Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDKC_DICDI9.274e-3460.00Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK2_PEA9.274e-3444.19Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK1_ORYSJ9.274e-3461.26Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK_NEUCR1.211e-3356.64Nucleoside diphosphate kinase OS=Neurospora crassa... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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