FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 71/110 (64.55%), Postives = 85/110 (77.27%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ER+FIAIK    QR LI EII+RFE+KGFKLV IKI+VP+ E A KHY DL ++PFFNGL +F SSG V+AMV+EG+ V+  GR LIGATDP +S PGTIR DL +  GR
Sbjct:   73 ERSFIAIKVSSTQRRLIGEIIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLVKFFSSGAVVAMVFEGKDVVRTGRVLIGATDPSQSAPGTIRFDLCIETGR 182          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME++FI IKPDGVQRGLI +IISRFE+KGF L  +K +   + FAQ+HY DL ++PFF GL E++ SGPV+AMVWEG+ V+  GR++IGAT P ++ PGTIR D AV VGR
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.553e-33
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V  S+E  ++HY +L+E+PF++ L +++SSGPV+AMVW+G  V+   R LIGATDP  + PGTIRGD  + VG+
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGK 131          

HSP 2 Score: 20.7866 bits (42), Expect = 1.553e-33
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  672 KNIIHGSD 695
            KN+IHGSD
Sbjct:  131 KNVIHGSD 138          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            MERT++ IKPDGVQR LI EI+SRFE+KGF L+  K++  +KE A+ HY + KERPFF  L +F++SGPV AMVWEGE VI   RK++GAT+P  +EPGTIRGD  V V
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQV 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.023e-33
Identity = 64/110 (58.18%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V  S+E  ++HY +L+ERPF+  L ++++SGPV+AMVW+G  V+   R LIGAT+P  + PGTIRGD  + VG+
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGK 131          

HSP 2 Score: 20.4014 bits (41), Expect = 2.023e-33
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  672 KNIIHGSD 695
            KN+IHGSD
Sbjct:  131 KNLIHGSD 138          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.025e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFIAIKPDGVQRGL+ EI+ RFER+GFKLV +K++  S+  AQKHY + KERPFF GL  F++S PV+A+V EG+GV+   R ++G T+P  S  GTIRGD  + +GR
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.339e-32
Identity = 63/111 (56.76%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERT++ IKPDGVQRGL+ EIISRFE+KGFKLV +K +  ++E A+KHY +   +PFF GL +++ SGPV+AM WEG+ +++  R+++GAT+P K+ PGTIRG  AV +GR
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAAPGTIRGTYAVDIGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.681e-32
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            MER+F+ +KPDGVQRGLI E+ISR ER+G KLVA K++  S+E A++HY  LK++PFF  L EF++SGPV+AMVWEG   I+  RK +GAT+P  +EPGTIR D A
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFA 106          

HSP 2 Score: 21.1718 bits (43), Expect = 1.681e-32
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  657 SCCCWKNIIHGSDG 698
            +C    N++HGSDG
Sbjct:  106 ACDVSYNVVHGSDG 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_ASHGO (Nucleoside diphosphate kinase OS=Ashbya gossypii GN=NDK1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.983e-32
Identity = 63/110 (57.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRGLIS+I+SRFE +G+KLV IK+V P++   ++HY +  E+PFF  +  +++SGP++A VWEG+ V+  GR ++GAT+P  S PGTIRGD A+ +GR
Sbjct:    4 ERTFIAIKPDGVQRGLISKILSRFESRGYKLVGIKLVTPTENLLKQHYAEHVEKPFFPKMLAYMTSGPILATVWEGKDVVKQGRVILGATNPLNSAPGTIRGDFALDMGR 113          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 62/109 (56.88%), Postives = 87/109 (79.82%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++  S+E A++HY + +E+PFF GL  F++SGPV+AMV EG GV+   RK++GAT P+ + PGTIRGD A  +
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTI 109          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKM_DICDI1.211e-3364.55Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDK1_ORYSI1.211e-3361.26Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK3_MOUSE1.553e-3359.09Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_BACHD1.582e-3361.47Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK3_HUMAN2.023e-3358.18Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_GLOVI1.025e-3259.46Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_HELMI1.339e-3256.76Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_SYMTH1.681e-3260.38Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_ASHGO2.983e-3257.27Nucleoside diphosphate kinase OS=Ashbya gossypii G... [more]
NDK_THET83.896e-3256.88Nucleoside diphosphate kinase OS=Thermus thermophi... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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