FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 62/110 (56.36%), Postives = 85/110 (77.27%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIA+KPDGVQR ++ E+I RFE+KGFKLVA+K +   K+  +KHY +L ++PF+  L +++SSGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 113          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 62/109 (56.88%), Postives = 87/109 (79.82%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV 669
            MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++  S+E A++HY + +E+PFF GL  F++SGPV+AMV EG GV+   RK++GAT P+ + PGTIRGD A  +
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTI 109          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 8.209e-32
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TF+ +KPDGVQR LI EI+ RFE KG+KL   K++  S + A+ HY + KERPFF  L +F++SGPV AMVWEGE VI   RK++G T+P +++P TIRGD  + VG+
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGK 111          

HSP 2 Score: 21.1718 bits (43), Expect = 8.209e-32
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  672 KNIIHGSD 695
            KNIIHGSD
Sbjct:  111 KNIIHGSD 118          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.481e-31
Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  334 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +++ ERTFIA+KPDGVQRGL+S+I+SRFE+KG+KLVAIK+V    +  ++HY +   +PFF  +  F+ SGP++A VWEG+ V+  GR ++GAT+P  S PGTIRGD  + +GR
Sbjct:    2 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGR 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.481e-31
Identity = 62/111 (55.86%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERT++ +KPDGVQRGLI +IIS+FE+KG+K+V +K++  S+E A++HY +   +PFFNGL +F++SGPV+AMV EG+ V+T  R+++GAT+P K+ PGTIR    V VGR
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGR 111          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31
Identity = 62/110 (56.36%), Postives = 83/110 (75.45%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVG 672
            ME+TF+ +KPDGVQR LI EI+SRFE+KG++LV  K++  S+E A++HY + KERPFF  L +F++SGPV AMVW+G  VIT  R ++G T+P  +  GTIRGD A  VG
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVG 110          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 5.215e-31
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TFI +KPDGVQR LI +I+SRFERKG +L   K++  +++ A+KHY + + +PFF  L EF++SGPV AMVWEGE VI   R+LIG T+P+++ PGTIRGD  + VG+
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGK 112          

HSP 2 Score: 21.1718 bits (43), Expect = 5.215e-31
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  672 KNIIHGSD 695
            KNIIHGSD
Sbjct:  112 KNIIHGSD 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.215e-31
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY + KE+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P ++ PGTIRGD  V V +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAK 111          

HSP 2 Score: 21.1718 bits (43), Expect = 5.215e-31
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  672 KNIIHGSD 695
            KNIIHGSD
Sbjct:  111 KNIIHGSD 118          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_EXISA (Nucleoside diphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ndk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 62/106 (58.49%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 660
            ME+TF+ +KPDGV+RGLI EIISRFE KG+ L  +++V PS E A+ HY + KE+PFF  L EFL+SGPV+AM WEGE ++   R +IG T P  ++PGTIRGD A
Sbjct:    1 MEKTFLMVKPDGVKRGLIGEIISRFENKGYTLNRLEMVTPSVEVAEAHYAEHKEKPFFGELVEFLTSGPVVAMEWEGEDIVAVSRLMIGKTKPVDAQPGTIRGDFA 106          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.597e-31
Identity = 62/110 (56.36%), Postives = 83/110 (75.45%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFI IKPD VQRGLI +I  RFE++G+KLVA+K++  +K   + HY +L+ +PFFN L  ++SSGPVIAMVWEG  V+   R+++GAT+P  S PGTIRGD ++  GR
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGR 115          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_GINCI3.896e-3256.36Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_THET25.089e-3256.88Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_OCEIH8.209e-3254.95Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_YEAST1.481e-3153.51Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_DESRM1.481e-3155.86Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_BREBN2.526e-3156.36Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK_BACSU5.215e-3155.86Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_BACCR5.215e-3153.15Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_EXISA5.626e-3158.49Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_BRUMA9.597e-3156.36Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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