FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_YEAS7 (Eukaryotic translation initiation factor 3 subunit I OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF34 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.279e-26
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 508
            M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT  GH G +W  DV   +   +TGSAD + KLW+V  G  + T+    P + V+F+      +   D  M+   +I++  I RD A
Sbjct:    1 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 132          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: STRAP_DICDI (Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.729e-18
Identity = 52/181 (28.73%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  116 RPILMKGHERPLTYLKY---NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETG 646
            +P++  GH RP++ L +   N DG  + S   D +P +   +NG+ +GT+ GH GAVW    +  +   +T SAD T KLW+   G+++ +    S  ++ DF+  +   V           +  + RI     ++  + +L + G    I  A W   N  I+ S G D ++RIWD  +G
Sbjct:    3 QPLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSRFNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVV--------TGGSEKILRIF--DLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDEVIRIWDLRSG 173          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: STRAP_CHICK (Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 53/178 (29.78%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  119 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 643
            P+   GH RP+  L ++     G  L S  KD  P +   D G+ +GT+ GH GAVW   +++D+    T +AD TAK+W+  +G +L T       +SVDF   D   ++T       +  + +  +++  A+       ++ G    I +A+W   ++ I+SA +D  VR+WD  T
Sbjct:    7 PLTCSGHTRPVVDLAFSGVTPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELITLAHKHIVKSVDF-TQDSNYLLTGGQ----DKLLRIYDLSKPEAEPD-----VVSGHTSGIKKALWSSDDKQILSA-DDKTVRLWDRST 173          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 50/178 (28.09%), Postives = 80/178 (44.94%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG--AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            ++GH   +  L +N  GD + + + DHT  VW AD G ++    GH   +     + D   ++TGS D+T KLW+   G      T + D    S     G  +A  + D    + SA   K IA+            L+G +G I++  + P    +++   D   RIWD +TG+ L
Sbjct:  215 LRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAK------------LEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCL 380          

HSP 2 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 50/176 (28.41%), Postives = 77/176 (43.75%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            ++K H  PLT +  NK G    + + D T  +W   +GE L T  GH   V+    +      + TGS D+T KLW+VETG    TF   +           ++  ++ +P   L +   +   A+    Q GE V  L+G    I    +      II+   D  V +WD +TG+
Sbjct:   87 VLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTA----------EIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGR 252          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: STRAP_RAT (Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  119 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 643
            P+   GH RP+  L ++     G  L S  KD  P +   D G+ +GT+ GH GAVW   +++D+    T +AD TAK+W+  +G +L T       ++VDF        + T    +L     + +   +P +        + G    I +A+W   ++ I+SA +D  VR+WD  T
Sbjct:    7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSN--YLLTGGQDKLLRIYDLNKPEAEPKE--------ISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT 173          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: STRAP_HUMAN (Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  119 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 643
            P+   GH RP+  L ++     G  L S  KD  P +   D G+ +GT+ GH GAVW   +++D+    T +AD TAK+W+  +G +L T       ++VDF        + T    +L     + +   +P +        + G    I +A+W   ++ I+SA +D  VR+WD  T
Sbjct:    7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSN--YLLTGGQDKLLRIYDLNKPEAEPKE--------ISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT 173          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: STRAP_BOVIN (Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  119 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 643
            P+   GH RP+  L ++     G  L S  KD  P +   D G+ +GT+ GH GAVW   +++D+    T +AD TAK+W+  +G +L T       ++VDF        + T    +L     + +   +P +        + G    I +A+W   ++ I+SA +D  VR+WD  T
Sbjct:    7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSN--YLLTGGQDKLLRIYDLNKPEAEPKE--------ISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT 173          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: STRAP_MOUSE (Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  119 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 643
            P+   GH RP+  L ++     G  L S  KD  P +   D G+ +GT+ GH GAVW   +++D+    T +AD TAK+W+  +G +L T       ++VDF        + T    +L     + +   +P +        + G    I +A+W   ++ I+SA +D  VR+WD  T
Sbjct:    7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSN--YLLTGGQDKLLRIYDLNKPEAEPKE--------ISGHTSGIKKALWCSDDKQILSA-DDKTVRLWDHAT 173          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14
Identity = 56/214 (26.17%), Postives = 94/214 (43.93%), Query Frame = 2
Query:   35 GFPTLHRKLHSSR-----NSGKQRXXXXXASMRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA--RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR----TIISAGEDAIVRIWDTET 643
            G+PT        R     N G Q      ++     +K H+R +  ++ +KDG ++ S ++D T  +W +  GE +G  RGH   VW C  +  S  L +GS D+T ++WNV+T   + T    + A  + +  + G ++     D  +++ S               GE V  L   + R    VW   +R     ++S G DA+V +W   T
Sbjct:  425 GYPTFLASSSQDRTLKRFNLGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSL------------SSGECVATLDNHEDR----VWALASRFDGSLLVSGGADAVVSVWKDVT 622          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 50/178 (28.09%), Postives = 79/178 (44.38%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG--AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH   +  L +N  G+ + + + DHT TVW AD G ++ T  GH   +     + D   ++TGS D+T KLW+   G      T + D    S     G  +A  + D    + SA               E V  L+G +G I++  + P    +++   D   RIWD +TG+ L
Sbjct:  215 LTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSA------------ATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCL 380          

HSP 2 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 48/176 (27.27%), Postives = 76/176 (43.18%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            +++ H  PLT +  NK G    + + D T  +W   +GE L T  GH   V+    +      + TGS D+T KLW+VETG    TF   +           ++  ++ +P   L +   +   A+    Q GE V  L G    I    +      II+   D  V +W+ +TG+
Sbjct:   87 VLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTA----------EIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGR 252          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EIF3I_YEAS71.279e-2643.94Eukaryotic translation initiation factor 3 subunit... [more]
STRAP_DICDI3.729e-1828.73Serine-threonine kinase receptor-associated protei... [more]
STRAP_CHICK7.776e-1629.78Serine-threonine kinase receptor-associated protei... [more]
WDR69_HUMAN3.859e-1528.09WD repeat-containing protein 69 OS=Homo sapiens GN... [more]
STRAP_RAT1.123e-1429.21Serine-threonine kinase receptor-associated protei... [more]
STRAP_HUMAN1.123e-1429.21Serine-threonine kinase receptor-associated protei... [more]
STRAP_BOVIN1.123e-1429.21Serine-threonine kinase receptor-associated protei... [more]
STRAP_MOUSE1.466e-1429.21Serine-threonine kinase receptor-associated protei... [more]
UTP13_SCHPO1.915e-1426.17Probable U3 small nucleolar RNA-associated protein... [more]
WDR69_BOVIN5.572e-1428.09WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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