FC923131

Overview
NameFC923131
Unique NameFC923131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNJB6_RAT (DnaJ homolog subfamily B member 6 OS=Rattus norvegicus GN=Dnajb6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD 287
            YY VLGV  H+S E+I++AYRK A++WHPD   K P    +A+ KF+++ EAY VLSD +KR +YD
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNJB6_MOUSE (DnaJ homolog subfamily B member 6 OS=Mus musculus GN=Dnajb6 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD 287
            YY VLGV  H+S E+I++AYRK A++WHPD   K P    +A+ KF+++ EAY VLSD +KR +YD
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNAJ_THEM4 (Chaperone protein dnaJ OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD 287
            YY +LGVS +++ EEIR+AY+KL  +WHPDR  +   L   A+ KF+EIQEAY VLSD  KR +YD
Sbjct:    6 YYEILGVSRNATQEEIRQAYKKLIKKWHPDRNYENKKL---AEEKFKEIQEAYEVLSDPEKRAMYD 68          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 3
Query:   78 VQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYDAGLYDPXXXXXXGFSDFVQE 347
            V   YY +L V  ++S EEI++AYRKLA+++HPDR    P    +A+ KF+ I EAY VLSDE KR LYD   Y        GFS F Q+
Sbjct:    2 VDIDYYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNP----EAEEKFKLINEAYQVLSDEEKRALYDQ--YGKAGLENQGFSGFNQK 85          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNAJ_HELPY (Chaperone protein dnaJ OS=Helicobacter pylori GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   87 SYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD----AGLYDPXXXXXXGFSDFVQEMLSLMAEA--------RKEEKSYSMEELQTM 416
            SYY +L V  HS+ E I+++YRKLA+++HPDR         +A+ KF+ I EAY VLSDE+KR LYD     GL +        FSDF +++ S   +A        ++++ S + + LQT+
Sbjct:    4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL-NQAGASQGDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTL 120          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNAJ_THEAB (Chaperone protein dnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD----AGLYDPXXXXXXGFSDF 338
            YY +LGVS ++S EEIR+AY++L  +WHPDR  +      +A+ KF+EIQEAY VLSD  KR +YD     G   P      GF  F
Sbjct:    6 YYEILGVSRNASQEEIRQAYKQLIKKWHPDRNHQNRK---EAEEKFKEIQEAYEVLSDPEKRAMYDRFGYVGDVPPNAGSGGGFGGF 89          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGE (Chaperone protein dnaJ OS=Mycoplasma genitalium GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKA-KVKFQEIQEAYSVLSDERKRTLYD 287
            YY VLG+S ++S ++I+RA+RKLAMQ+HPDR         K  + KF+E+ EAY VLSDE KR LYD
Sbjct:    8 YYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEAYEVLSDEEKRKLYD 74          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNJ6B_XENLA (DnaJ homolog subfamily B member 6-B OS=Xenopus laevis GN=dnajb6-B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD 287
            YY VLGV  +SS ++I++AYR+LA++WHPD   K P    +A+ +F+E+ EAY VLSD +KR +YD
Sbjct:    4 YYDVLGVQRNSSPDDIKKAYRRLALKWHPD---KNPDNKEEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   90 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD 287
            YY VLGV  ++S ++I++AYR+LA++WHPD   K P    +A+ +F+E+ EAY VLSD +KR +YD
Sbjct:    4 YYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of FC923131 vs. ExPASy Swiss-Prot
Match: DNAJ_THESQ (Chaperone protein dnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   72 RKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPPLLGKAKVKFQEIQEAYSVLSDERKRTLYD 287
            +K +  YY +LGV   ++ EEI+RAY++L  +WHPDR    P    +A+ +F+EIQEAY VLSD +KR +YD
Sbjct:    2 KKEKKDYYEILGVPRDATQEEIKRAYKRLVKEWHPDR---HPENRKEAEQRFKEIQEAYEVLSDPQKRAMYD 70          
The following BLAST results are available for this feature:
BLAST of FC923131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
DNJB6_RAT7.454e-1353.03DnaJ homolog subfamily B member 6 OS=Rattus norveg... [more]
DNJB6_MOUSE7.454e-1353.03DnaJ homolog subfamily B member 6 OS=Mus musculus ... [more]
DNAJ_THEM47.454e-1356.06Chaperone protein dnaJ OS=Thermosipho melanesiensi... [more]
DNAJ_NITSB9.735e-1347.78Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_HELPY9.735e-1338.52Chaperone protein dnaJ OS=Helicobacter pylori GN=d... [more]
DNAJ_THEAB1.271e-1247.13Chaperone protein dnaJ OS=Thermosipho africanus (s... [more]
DNAJ_MYCGE1.271e-1255.22Chaperone protein dnaJ OS=Mycoplasma genitalium GN... [more]
DNJ6B_XENLA1.661e-1251.52DnaJ homolog subfamily B member 6-B OS=Xenopus lae... [more]
DNJ6A_XENLA1.661e-1250.00DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNAJ_THESQ1.661e-1248.61Chaperone protein dnaJ OS=Thermotoga sp. (strain R... [more]

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Properties
Property NameValue
Genbank descriptionC31701D09EF StrClemenN Citrus clementina cDNA clone C31701D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923131 ID=FC923131; Name=FC923131; organism=Citrus clementina; type=EST; length=736bp
GATTCATAACCGCCACGCTTTTGATGTTTGAAGCTGAACACAAATTATGA
AATATGGAGGCAGAGAGTGAAAGGAAAGTGCAGCCATCTTATTACAGCGT
TCTGGGTGTGAGTGTGCACTCTTCTGTTGAAGAAATAAGGCGCGCTTATC
GCAAGCTTGCTATGCAATGGCATCCTGATCGGTGGACAAAGACTCCACCT
TTGTTGGGTAAAGCCAAGGTTAAATTCCAGGAAATTCAAGAAGCCTATTC
TGTTTTGTCAGATGAGAGGAAGAGGACACTATATGATGCTGGGTTATATG
ACCCTGAAGAAGAAGAGGAAGAGGGATTTTCAGATTTTGTGCAAGAAATG
CTGTCTCTAATGGCTGAGGCGAGGAAAGAGGAAAAAAGCTACAGCATGGA
GGAGCTGCAAACAATGTTCATGGAAATGGCACAAGAATTTGAGCAGTCCT
CGTGGTTCTGCGGATACCCAGTTGCTGATGATTCCTGCTCCTTGGAGAGT
ACACAGTGGAATACGAATTTAATAGACAATAATAGAAACGCACAATTTGG
TGCTTTTCCAGGGTGGCAGTTCTATGGAGCAAGTGGTTTTTGCAGATAAA
AGAATCCATTTGGATTCAAGCAGTGGATGCAAGATTTGAACATGAAAACG
AGCAGTGCGCCTCTGATTTTTGCTCTGATTGTTTTTGGTGTGGAGACATC
ACATTTTGTGGGAACGTCTTTGCTCTGATGTCCTCT
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