FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROMM (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +    +VG ++  QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGLVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAHGKVGSLSRSQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROM4 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 95/132 (71.97%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNA+T DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS D  + QVG I   QL  IA  KLPDLNC++IESAMR+I GTA NMG+ +
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGDSAKGQVGTINRAQLEEIAKTKLPDLNCSNIESAMRVIEGTARNMGVSV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CYAP8 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.010e-49
Identity = 94/132 (71.21%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNA+TAD+AG VIPVEI+V++DRSFTF+LKTPPASVL+ KAAGVE+GS  P + +VG IT +QLR IA  K+PDLN   IE+AM+I+AGTA NMG+ I
Sbjct:    8 MIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADQAGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAGVERGSNQPNKTKVGSITQDQLREIAQTKMPDLNANDIEAAMKIVAGTARNMGVTI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THEEB (50S ribosomal protein L11 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 92/132 (69.70%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLA++AGKA PAPP+GPALG  GVNIM FCK+YNARTAD+ G V+PVEI+VY+DRSFTF+LKTPPASVL+ KAAG+EKGS +P +++VG IT  QLR IA +K+PDLN   IE+AMRII GTA NMG+ I
Sbjct:    8 VIKLAIQAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQVGMVVPVEISVYEDRSFTFVLKTPPASVLIQKAAGIEKGSGEPNKKKVGSITRAQLREIAEKKMPDLNANDIEAAMRIIEGTARNMGVTI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNY3 (50S ribosomal protein L11 OS=Synechocystis sp. (strain PCC 6803) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 96/133 (72.18%), Postives = 110/133 (82.71%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNA+TADK G +IPVEI+V++DRSFTFILKTPPASVL+ KAAGVEKGS +P + +V  IT EQLR IA  KLPDLN   I++AM II GTA NMGI ++
Sbjct:    8 LIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADKPGMIIPVEISVFEDRSFTFILKTPPASVLIRKAAGVEKGSSEPNKNKVASITREQLREIAQTKLPDLNANDIDAAMNIIEGTARNMGITVN 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNP6 (50S ribosomal protein L11 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNART DK G VIPVEI+V++DRSFTFILKTPPASVL+ KAAG+E+GS +P + +VGKIT  QLR IA  KLPD N  ++E+AMRI+ GTA NMG+ I
Sbjct:    8 LIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKVGLVIPVEISVFEDRSFTFILKTPPASVLIAKAAGIERGSGNPNKTKVGKITTAQLREIAETKLPDFNTKNVEAAMRIVEGTARNMGVTI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROMS (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain AS9601) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 94/132 (71.21%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROM2 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 94/132 (71.21%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROM0 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 94/132 (71.21%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROMA (50S ribosomal protein L11 OS=Prochlorococcus marinus GN=rplK PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.784e-48
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+ KGS D  + Q G I   QL  IA  KLPDLNC +IESAM++IAGTA NMG+ +
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIAKGSGDSAKGQAGSINRAQLEEIAKTKLPDLNCNNIESAMKVIAGTARNMGVSV 139          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_PROMM4.696e-4973.4850S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROM44.696e-4971.9750S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_CYAP88.010e-4971.2150S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_THEEB1.366e-4869.7050S ribosomal protein L11 OS=Thermosynechococcus e... [more]
RL11_SYNY31.366e-4872.1850S ribosomal protein L11 OS=Synechocystis sp. (st... [more]
RL11_SYNP61.366e-4871.9750S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_PROMS1.366e-4871.2150S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROM21.366e-4871.2150S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROM01.366e-4871.2150S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROMA1.784e-4871.2150S ribosomal protein L11 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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