FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_OCEIH (50S ribosomal protein L11 OS=Oceanobacillus iheyensis GN=rplK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 81/133 (60.90%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            L+KL + AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEITV++DRSFTFI KTPPA+VLL KAAG+E GS +P + +V  +  +Q++ IA  K+PDLN   +++AMR++ GTA +MGI I+
Sbjct:    8 LVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGMIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNKNKVASVKRDQVKEIAETKMPDLNAADVDAAMRMVEGTARSMGITIE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOPS (50S ribosomal protein L11 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 86/130 (66.15%), Postives = 104/130 (80.00%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI 642
            +IKL L AGKATPAPPVGPALG  GVNIM FCK++NA+TADKAG +IPV ITVY DRSF+FILKTPPA+VL+ K  G+E GS  P + +VG IT EQ+R IA  K+PDLN  +IE+AM +I GTA +MG+
Sbjct:    8 MIKLQLPAGKATPAPPVGPALGQHGVNIMGFCKEFNAKTADKAGLIIPVVITVYQDRSFSFILKTPPAAVLIKKELGLESGSGVPNRTKVGNITKEQIRKIAELKMPDLNAATIETAMSMIEGTARSMGV 137          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOPE (50S ribosomal protein L11 OS=Clostridium perfringens GN=rplK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 86/130 (66.15%), Postives = 104/130 (80.00%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI 642
            +IKL L AGKATPAPPVGPALG  GVNIM FCK++NA+TADKAG +IPV ITVY DRSF+FILKTPPA+VL+ K  G+E GS  P + +VG IT EQ+R IA  K+PDLN  +IE+AM +I GTA +MG+
Sbjct:    8 MIKLQLPAGKATPAPPVGPALGQHGVNIMGFCKEFNAKTADKAGLIIPVVITVYQDRSFSFILKTPPAAVLIKKELGLESGSGVPNRTKVGNITKEQIRKIAELKMPDLNAATIETAMSMIEGTARSMGV 137          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOP1 (50S ribosomal protein L11 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 86/130 (66.15%), Postives = 104/130 (80.00%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI 642
            +IKL L AGKATPAPPVGPALG  GVNIM FCK++NA+TADKAG +IPV ITVY DRSF+FILKTPPA+VL+ K  G+E GS  P + +VG IT EQ+R IA  K+PDLN  +IE+AM +I GTA +MG+
Sbjct:    8 MIKLQLPAGKATPAPPVGPALGQHGVNIMGFCKEFNAKTADKAGLIIPVVITVYQDRSFSFILKTPPAAVLIKKELGLESGSGVPNRTKVGNITKEQIRKIAELKMPDLNAATIETAMSMIEGTARSMGV 137          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_GRATL (50S ribosomal protein L11, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl11 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            L+KLAL AGKATPAPPVGPALG  G NI+ FCK+YNARTA+K G VIPVEI++Y+DRSF FILKTPPA+VLL KAA ++ GS  P  +++G I+++QL  IA  KL DLN   ++ AM+I+ GTA NMGI I+
Sbjct:    8 LVKLALNAGKATPAPPVGPALGQYGANIVMFCKEYNARTANKVGLVIPVEISIYEDRSFCFILKTPPAAVLLKKAAQIQSGSGQPNTKKIGSISLQQLEEIAKTKLQDLNTQDVKKAMKIVKGTAKNMGIKIN 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STAAW (50S ribosomal protein L11 OS=Staphylococcus aureus (strain MW2) GN=rplK PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + +V  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STAAT (50S ribosomal protein L11 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + +V  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STAAS (50S ribosomal protein L11 OS=Staphylococcus aureus (strain MSSA476) GN=rplK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + +V  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STAAR (50S ribosomal protein L11 OS=Staphylococcus aureus (strain MRSA252) GN=rplK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + +V  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STAAN (50S ribosomal protein L11 OS=Staphylococcus aureus (strain N315) GN=rplK PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + +V  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_OCEIH5.029e-4360.9050S ribosomal protein L11 OS=Oceanobacillus iheyen... [more]
RL11_CLOPS5.029e-4366.1550S ribosomal protein L11 OS=Clostridium perfringe... [more]
RL11_CLOPE5.029e-4366.1550S ribosomal protein L11 OS=Clostridium perfringe... [more]
RL11_CLOP15.029e-4366.1550S ribosomal protein L11 OS=Clostridium perfringe... [more]
RK11_GRATL5.029e-4363.1650S ribosomal protein L11, chloroplastic OS=Gracil... [more]
RL11_STAAW6.568e-4363.1650S ribosomal protein L11 OS=Staphylococcus aureus... [more]
RL11_STAAT6.568e-4363.1650S ribosomal protein L11 OS=Staphylococcus aureus... [more]
RL11_STAAS6.568e-4363.1650S ribosomal protein L11 OS=Staphylococcus aureus... [more]
RL11_STAAR6.568e-4363.1650S ribosomal protein L11 OS=Staphylococcus aureus... [more]
RL11_STAAN6.568e-4363.1650S ribosomal protein L11 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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