FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 2.894e-68
Identity = 127/178 (71.35%), Postives = 150/178 (84.27%), Query Frame = 3
Query:  129 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            DY+FKVVLIGDS VGKS LL+RF RNEF+L+SK+TIGVEF TR++  D + VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F++V RWL+ELR H D NIVIML+GNK+DL  LR V TEDA  FAEREN FFMETSALES NVENAF  VLT+IYR+VS+K L   ++
Sbjct:   16 DYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEE 193          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.780e-68
Identity = 124/181 (68.51%), Postives = 154/181 (85.08%), Query Frame = 3
Query:  114 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIG 656
            + ++YDYL+K+VLIGDSGVGKSNLLSRFTRNEFSLE+KSTIGVEFATR+I+ + K +KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+ +  T+++VERW+ ELR++ D NI IMLVGNK+DLRHLR VST++A  F+E+    F+ETSAL+S NVE AF  +LTQIY ++SR +   G
Sbjct:    6 SQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTG 186          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.035e-66
Identity = 122/178 (68.54%), Postives = 150/178 (84.27%), Query Frame = 3
Query:  114 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            A+   DY+FKVVLIGDS VGKS +L+RF RNEFSL+SKSTIGVEF TR++  D K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR+H D NIVI+L+GNK DL + R V TEDA  FAE+E  FF+ETSALE+ NVE+AFT VLT+IY +V++K+L
Sbjct:   10 ANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSL 187          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.672e-65
Identity = 125/214 (58.41%), Postives = 160/214 (74.77%), Query Frame = 3
Query:  114 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD-----DPAALPRDRQIMWN*DDVSAVRKSMCS 740
            A    DY+FKVVLIGDS VGKS +L+RF RNEFSL+SK+TIGVEF TR++    K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR H D NIVIML+GNK DL   RAV TEDA  FA++E  FF+ETSA+E+ N+E+AF  VLT+I+ +V++K L   D     +PA+L   + ++     V   +K+ CS
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCS 221          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 7.377e-64
Identity = 115/182 (63.19%), Postives = 146/182 (80.22%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPA 668
            DYD LFK+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++  D K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ + L+GNK+DL HLRAV TE++  FA+     F ETSAL S NV+ AF E++  IY+ VS+  +++GD  A
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.156e-63
Identity = 122/214 (57.01%), Postives = 158/214 (73.83%), Query Frame = 3
Query:  114 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL-----EIGDDPAALPRDRQIMWN*DDVSAVRKSMCS 740
            A    DY+FKVVLIGDS VGK+ +L+RF RNEFSL+SK+TIGVEF TR++    K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR H D NIVIML GNK DL   RAV TEDA  FA++E  FF+ETSA+E+  +E+AF  VLT+I+ +V++K L     +   +PA+L   + ++     V   +K+ CS
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCS 221          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.624e-61
Identity = 112/177 (63.28%), Postives = 144/177 (81.36%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 653
            DYDYLFK+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR+I  ++K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ + L+GNK+DL HLRAV T++A  FA      F ETSAL S NV+ AF E++  I+++VS+  +++
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDL 185          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.475e-61
Identity = 119/194 (61.34%), Postives = 150/194 (77.32%), Query Frame = 3
Query:  111 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK--------ALEIGDDPA 668
            RA++DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++        A+ +G  PA
Sbjct:    4 RAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNNARTNAVTLGSGPA 197          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.845e-61
Identity = 116/177 (65.54%), Postives = 143/177 (80.79%), Query Frame = 3
Query:  111 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            R D+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct:    4 RTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQ 180          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 6.462e-60
Identity = 114/175 (65.14%), Postives = 142/175 (81.14%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            ++DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct:    6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ2.894e-6871.35Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI3.780e-6868.51Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11A_LOTJA6.035e-6668.54Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC6.672e-6558.41Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
YPT31_YEAST7.377e-6463.19GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11C_TOBAC8.156e-6357.01Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT32_YEAST2.624e-6163.28GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB25_BOVIN4.475e-6161.34Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB25_MOUSE5.845e-6165.54Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN6.462e-6065.14Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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