FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.311e-46
Identity = 92/179 (51.40%), Postives = 118/179 (65.92%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY+ +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.311e-46
Identity = 90/179 (50.28%), Postives = 118/179 (65.92%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE A+     +IYR + +   ++ ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNE 181
[Close]
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.937e-46
Identity = 91/179 (50.84%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IY  +     +I ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE 181
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_RABIT3.114e-4651.40Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB3.114e-4651.40Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE3.114e-4651.40Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA3.114e-4651.40Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN3.114e-4651.40Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK3.114e-4651.40Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA3.114e-4651.40Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2_LYMST5.311e-4651.40Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MOUSE5.311e-4650.28Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_RAT6.937e-4650.84Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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