FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.936e-42
Identity = 83/188 (44.15%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF----TEVLTQIYRVVSRKALEIGDDPAALP 677
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R++  D K +K QIWDTAGQER+R IT+AYYRGA+G + VYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E     A      F+ETSA  S+NVE AF     +++T++ + ++  +L+   D    P
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSP 192          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.354e-41
Identity = 85/166 (51.20%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 620
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++  D K++K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V  + A AFA+     F+ETSA  + NVE AF  +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.354e-41
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI-YRVVSRKALEIGDDPAALPRD 683
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++  D K++K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V    A AFA+     F+ETSA  + NVE AF  +  +I  R+ S+        P   P++
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQE 191          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.354e-41
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 3
Query:  111 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL-RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 620
            RA  DYDYL K++LIGDSGVGKS LL RF+   F+    +TIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  H   N+  +LVGNKAD+    RAV T    A A+     F ETSA  ++NVE  F  +   I
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E     A      FMETSA  ++NVENAF  +   I   + +K
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E     A      FMETSA  ++NVENAF  +   I   + +K
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E     A      FMETSA  ++NVENAF  +   I   + +K
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E     A      FMETSA  ++NVENAF  +   I   + +K
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 82/172 (47.67%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+  L RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +FEN+  W++ + +H   ++  M++GNK D    R VS E     A      FMETSA  ++N+ENAF  +   I   + +K
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E     A      FMETSA  ++NVENAF  +   I   + +K
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8_DISOM7.936e-4244.15Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
YPTV1_VOLCA1.354e-4151.20GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPTC1_CHLRE1.354e-4147.34GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RB1BV_BETVU1.354e-4150.88Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_RAT1.768e-4147.67Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.768e-4147.67Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA1.768e-4147.67Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN1.768e-4147.67Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CHICK1.768e-4147.67Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8A_CANFA1.768e-4147.67Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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