FC923144

Overview
NameFC923144
Unique NameFC923144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROMO (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila mojavensis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 79/198 (39.90%), Postives = 117/198 (59.09%), Query Frame = 2
Query:   56 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A  E+    +  VQ +GL ++K+IKHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    9 ARNEDSENTINYVQCDGLAVMKMIKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 203          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROPS (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila pseudoobscura pseudoobscura GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.106e-32
Identity = 78/198 (39.39%), Postives = 116/198 (58.59%), Query Frame = 2
Query:   56 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S +G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    9 ARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSARGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 203          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_YARLI (Eukaryotic translation initiation factor 3 subunit H OS=Yarrowia lipolytica GN=YALI0F16005g PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 2
Query:   92 VQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADG---------ANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSN------------QG-------ALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL---EPDTPVTQRDYDPPALSSSPFLER 700
            V I+  V LKI++HC+E +P++V GQLLGLDV   L +++ F FP         +D          A YQ EM+  L+EVNVD+N+VGWYQST+LG    A +IE    +QE     V ++YD + S             QG           +A +LS+ ++++ +S  F    L E NL++ D+  E+PV++ NS L +  + +L    P++P  +  +    +S  PFLE+
Sbjct:    6 VCIDSSVALKIVRHCQESAPSIVAGQLLGLDVDGELRISHAFAFPQNAAGGNPNSDDGLSLRLKAVAKYQPEMIDHLKEVNVDSNSVGWYQSTVLGRIYNASVIENLAVFQEKNPDSVVLVYDVAGSEVVSDTDPSSTGPQGHTTTTPSGFNLRAFRLSEEYLNVRKSGKFDTATLTENNLTYHDVLVELPVEIKNSNLATLLLYQLGQQYPNSPFAESSFSNLNVSVDPFLEK 239          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_CHAGB (Eukaryotic translation initiation factor 3 subunit H OS=Chaetomium globosum GN=CHGG_05046 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.711e-30
Identity = 78/225 (34.67%), Postives = 117/225 (52.00%), Query Frame = 2
Query:  131 HCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEED--EEIEADGAN-------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL-------EPDTPVTQRD-------------YDPPALSSSPFLER 700
            HC    P   TG ++G+D   V+E+TN FPFP  +    +  ++D  +             YQ EM+R L+EVNVD N VGWY S  +G F     IE   +YQ +  + V +++D SRS+QGAL+ +A +LS  FM  ++   FT E L++  L++ DI  E+PV V NS L+++F+ ++       E   P +  D             +D   LS  PFLE+
Sbjct:   28 HCSSSFPTTATGSIVGMDNNGVIEITNAFPFPTVDVSGTDSHQSDATSLAAAAPRAKANIAYQNEMIRHLKEVNVDANNVGWYTSATMGNFINLSFIENQHHYQRDNDKTVALVHDVSRSSQGALSLRAFRLSPEFMAAFKEGKFTTESLQKSKLTFRDILVEVPVVVHNSHLLTSFLHQIPAPPKSAEIPLPASLEDIRRDPAQLPAHPSFDTLDLSIDPFLEK 252          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_MONBE (Eukaryotic translation initiation factor 3 subunit H OS=Monosiga brevicollis GN=9558 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.764e-30
Identity = 73/215 (33.95%), Postives = 126/215 (58.60%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDV---------GSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            ++ V ++ LV++KIIKH +E     V G LLGL            ++LEVTNCFP P   +D++ ++    YQ++MMR LREVNVD+  VGWYQ+  +G F   ++      +Q ++   V +IYDP  + QG L+  A +LS+  M+L+ +++F  + +RE  L++  +FE++PV +  S++    + EL  +   ++  +D   L+++ F+ R
Sbjct:   30 VKQVTVDALVVMKIIKHARENPHEPVRGPLLGLSQLADASKPGEDALLEVTNCFPTPRVSDDDD-DSIVQQYQVQMMRWLREVNVDHMNVGWYQAADMGTFFDEDVAAVQFQHQRHMAESVVLIYDPVLTLQGTLSLSAFRLSNKAMELFSTDSFNPKAVREAGLTYRTVFEKVPVTIRASSMARLLIPELSANLDQSE-IFDRMDLNATSFMSR 242          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_USTMA (Eukaryotic translation initiation factor 3 subunit H OS=Ustilago maydis GN=UM00199 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 72/201 (35.82%), Postives = 112/201 (55.72%), Query Frame = 2
Query:   92 VQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFP-----IQEEDEEIEADGAN---YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRR--------CVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP 643
            V+++GL + KI+KHC++  PA  +G LLG+D+G  LE++N F  P       E DEE +    N   Y  +M+R LR+VN D N VG YQ   LG F  + +I+        + R         V I++D ++S QG  + KA +LS SF+D ++   F  + L +  L++ +I  EIPV + N+AL+ AF++ +  P  P
Sbjct:   57 VRLDGLALTKIVKHCRDAHPASASGALLGMDLGGTLEISNVFALPNPGRSNSERDEEEDRSSRNATRYTSDMVRLLRDVNADANPVGLYQGCFLGAFLNSSVIDGLAAITGLVERDGAGSRGKGVLIVHDLAQSAQGNTSVKAYRLSPSFVDAHKKGKFHTQSLIDHKLTFSNILIEIPVSLRNTALLDAFLSSISTPSAP 257          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_CAEEL (Eukaryotic translation initiation factor 3 subunit H OS=Caenorhabditis elegans GN=eif-3.H PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.731e-23
Identity = 66/203 (32.51%), Postives = 113/203 (55.67%), Query Frame = 2
Query:   74 APPLRVVQIEGLVMLKIIKHC--------KEFSPALVTGQLLGLDV--GSVLEVTNCFPF----PIQEED----EEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL 628
            AP ++ + ++ LV++KI+KH          E S     G L GL     S LE+TNCFP     P+ ++D    ++ E    +  L+M+R  R +N+D   VG+YQS   G   + +L+E+  +YQ      V +IYDP ++ QG L+ +A +LS + +DL   N++  E ++   L++ ++FEE+P+ + +S L +  M+EL
Sbjct:    9 APSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVKAAGLTYQNMFEELPIIIKSSYLNNVLMSEL 211          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_CAEBR (Eukaryotic translation initiation factor 3 subunit H OS=Caenorhabditis briggsae GN=eif-3.H PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.084e-23
Identity = 66/203 (32.51%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   74 APPLRVVQIEGLVMLKIIKHC--------KEFSPALVTGQLLGLDV--GSVLEVTNCFPF----PIQEED----EEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL 628
            AP ++ + ++ LV++KI+KH          E S     G L GL     S LE+TNCFP     P+ ++D    ++ E       L+M+R  R +N+D   VG+YQS   G   + +L+E+  +YQ      V +IYDP ++ QG L+ +A +LS + +DL   N++  E ++   L++ ++FEE+P+ + +S L +  M+EL
Sbjct:    9 APSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVRNEPVIDDDANAAQQYEEQKQQEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSIRAWRLSTAALDLASKNDWRPELVKSAGLTYQNMFEELPIIIKSSYLNNVLMSEL 211          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_BRUMA (Eukaryotic translation initiation factor 3 subunit H OS=Brugia malayi GN=Bm1_50170 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.019e-22
Identity = 65/204 (31.86%), Postives = 113/204 (55.39%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCK------------EFSPALVTGQLLGLDVGSVLEVTNCFPFPIQE---EDEEIEADGANYQ-------LEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL 628
            ++ VQI+ LV++KI+KH              E    L+TG L+ +D    LE+TNCFP    E   + +EI  + A Y+       L+M+R  R++N+D   VG+YQ+   G     E I++ ++YQ ++   V +IYDP ++ QG L+ +A +LS   +++    +++ E  R   L++ ++ EE+PV + NS L++  + EL
Sbjct:   14 VQFVQIDSLVVMKIVKHVDSEMYAGLNEVAGEACQGLLTG-LVSID-DRRLEITNCFPTARAEPMLDGDEIAQNNAFYEEQKQAEMLDMLRKFRDMNIDYELVGFYQAHPFGACFAQETIDSLIDYQASVPDGVVLIYDPVKTRQGQLSIRAYRLSTKALEMSLDGDWSPESTRTAGLTYENMLEELPVVIKNSHLVNVMLAEL 215          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_SCHPO (Eukaryotic translation initiation factor 3 subunit H OS=Schizosaccharomyces pombe GN=eif3h PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 60/202 (29.70%), Postives = 106/202 (52.48%), Query Frame = 2
Query:   74 APPLRVVQIEGLVMLKIIKHCKEFSPALVT-GQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGA-------NYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAEL-IETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL-EPDTPVT 649
            +PP+  V++E L+++ IIKHC++  P + T GQL+G+D+  VL+V++ F  P   E+EE   + +        +   M+  L+ +      VGWY    +  F ++   +ET   YQ+     +  +YD S+S+ G L  +A +L+  FM  +    +T   L   NL+  ++  E+P+ + NS L +  +  L EP TP +
Sbjct:   14 SPPIERVELESLLVMNIIKHCRDSFPNMGTIGQLVGIDIDGVLQVSSSFESPSVLENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTPAS 215          
The following BLAST results are available for this feature:
BLAST of FC923144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_DROMO4.965e-3339.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROPS1.106e-3239.39Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_YARLI5.138e-3034.19Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHAGB6.711e-3034.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MONBE8.764e-3033.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_USTMA6.281e-2835.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CAEEL2.731e-2332.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CAEBR6.084e-2332.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BRUMA3.019e-2231.86Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SCHPO3.338e-2129.70Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701E10EF StrClemenN Citrus clementina cDNA clone C31701E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923144 ID=FC923144; Name=FC923144; organism=Citrus clementina; type=EST; length=735bp
GAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCTAGGTCTTTTCTAC
AAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAGAGTTGTTCAGATT
GAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCAAGGAGTTTTCACC
AGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTTGGTAGCGTGCTTG
AAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGACGAAGAAATT
GAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGTCTAAGAGA
GGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCAACAATGCTAG
GATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAACTACCAGGAG
AATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAAGGTCCAATCA
AGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCCTTTATGGATC
TTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGAGAAAAATTTA
TCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCTCAAATTCTGC
ACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACTCCAGTCACAC
AGCGTGATTACGACCCGCCTGCATTGTCAAGCAGTCCATTCTTGGAGAGA
ATATGGAATTTTTGATTGATGCATGGATGATTGTC
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