FC923149

Overview
NameFC923149
Unique NameFC923149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923149 vs. ExPASy Swiss-Prot
Match: TRPE_HELPY (Anthranilate synthase component 1 OS=Helicobacter pylori GN=trpE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 57/208 (27.40%), Postives = 103/208 (49.52%), Query Frame = 1
Query:   67 PTVSRNKSAFISEVSRGDYVNNVENCLKYIKDGESYELCLTTQLRKRIGEIDSLGLYLHLREKNPAPYAAWLSFSKEDLCICCSSPERFLRLDK-NDLLEAKPIKGTIARGSTPEE------DEQLKLQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPNLMNVESYATVHTMVSTICGKKHSNVSAVYCVRAAFPGGSMTGAP 669
            P  S+      +  S  ++   V +  + IK GE ++  L+         ++ L  Y HL+  NP+PY  ++  S  D  +  +SPE  L+ +   +  E  PI GT  RG   +       D +++  LQ+  K++AE++M+VDL RND+ RV +    +   L+ V+ Y+ V  +VS + G+      +++  R+    G+++GAP
Sbjct:  214 PKKSKQSREVSANCSDSEFEKRVLSLQEEIKKGEIFQAVLSRSFYMEC--LEGLSAYYHLKLTNPSPYMFYIKDS--DFILFGASPESALKYNALTNTAEIYPIAGTRLRGKDKQGNIDYDLDSKMEFDLQHDYKERAEHIMLVDLARNDMARVSK--KRYCDKLLKVDKYSNVMHLVSRVVGELKKGCDSLHAYRSFMNAGTLSGAP 415          
BLAST of FC923149 vs. ExPASy Swiss-Prot
Match: TRPE_BUCTC (Anthranilate synthase component 1 OS=Buchnera aphidicola subsp. Tetraneura caerulescens GN=trpE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 56/190 (29.47%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  121 YVNNVENCLKYIKDGESYELCLTTQLRKRIGEIDSLGLYLHLREKNPAPYAAWLSFSKEDLCICCSSPERFLRLDK-NDLLEAKPIKGTIARGSTP------EEDEQLKLQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPNLMNVESYATVHTMVSTICGKKHSNVSAVYCVRAAFPGGSMTGAP 669
            Y N V+   + I +GE +++ ++ +          L  Y+ L++ NP+PY  ++        +  +SPE  L+       +E  PI GT  R  +        ED +++L ++ + K+ AE+ M+VDL RNDL R+C PGS  V +LM V  Y+ V  +VS + G   +++   +  +     G++TGAP
Sbjct:  258 YKNKVKKMKQMILNGEVFQIVISRKFFLPCPY--PLESYIFLKKNNPSPYMFFMQ--DRHFVLFGASPESSLKFSSITRKIEIHPIAGTRPRAFSSIKKIDINEDNKMELAMRINSKELAEHCMLVDLARNDLSRICLPGSRVVSDLMKVVKYSHVMHLVSKVEGVLRNDLDIFHAYQCCMNMGTLTGAP 443          
BLAST of FC923149 vs. ExPASy Swiss-Prot
Match: TRPE_HELPJ (Anthranilate synthase component 1 OS=Helicobacter pylori J99 GN=trpE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 53/179 (29.61%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  154 IKDGESYELCLTTQLRKRIGEIDSLGLYLHLREKNPAPYAAWLSFSKEDLCICCSSPERFLRLDK-NDLLEAKPIKGTIARGSTPEE------DEQLKLQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPNLMNVESYATVHTMVSTICGKKHSNVSAVYCVRAAFPGGSMTGAP 669
            IK GE ++  L+         ++ L  Y HL+  NP+PY  ++  S  D  +  +SPE  L+ +   +  E  PI GT  RG   +       D +++  LQ+  K++AE++M+VDL RND+ RV +    +   L+ V+ Y+ V  +VS + G+      +++  R+    G+++GAP
Sbjct:  243 IKKGEIFQAVLSRSFYMEC--LEGLSAYYHLKLSNPSPYMFYIKDS--DFILFGASPESALKYNALTNTAEIYPIAGTRLRGKDKQGNIDYDLDSKMEFDLQHDYKERAEHIMLVDLARNDMARVSK--KRYCDKLLKVDKYSNVMHLVSRVVGELKKGCDSLHAYRSFMNAGTLSGAP 415          
BLAST of FC923149 vs. ExPASy Swiss-Prot
Match: TRPE_CORGL (Anthranilate synthase component 1 OS=Corynebacterium glutamicum GN=trpE PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.209e-15
Identity = 56/159 (35.22%), Postives = 81/159 (50.94%), Query Frame = 1
Query:  220 DSLGLYLHLREKNPAPYAAWLSFSKEDLC--ICCSSPERFLRLDK-NDLLEAKPIKGTIARGSTP------EEDEQLKLQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPNLMNVESYATVHTMVSTICGKKHSNVSAVYCVRAAFPGGSMTGAP 669
            D+   YL LR  NP+PY  ++    E     +  +SPE  L+    N  L+  PI GT  RG  P      E D + +L ++   K+ AE+ M+VDL RNDL RV  P S  V +L+ V+ Y+ V  +VS +       + A+   RA    G++TGAP
Sbjct:  268 DAFAAYLQLRATNPSPYMFYIRGLNEGRSYELFGASPESNLKFTAANRELQLYPIAGTRPRGLNPDGSINDELDIRNELDMRTDAKEIAEHTMLVDLARNDLARVSVPASRRVADLLQVDRYSRVMHLVSRVTATLDPELDALDAYRACMNMGTLTGAP 426          
BLAST of FC923149 vs. ExPASy Swiss-Prot
Match: TRPE_RHIME (Anthranilate synthase OS=Rhizobium meliloti GN=trpE(G) PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 56/185 (30.27%), Postives = 93/185 (50.27%), Query Frame = 1
Query:  115 GDYVNNVENCLKYIKDGESYELCLTTQLRKRIGEIDSLGLYLHLREKNPAPYAAWLSFSKEDLCICCSSPERFLRLDKNDLLEAKPIKGTIARGSTPEEDEQLKLQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPNLMNVESYATVHTMVSTICGKKHSNVSAVYCVRAAFPGGSMTGAP 669
            G+Y   V    +  + G+ +E+    +  +R     S  +   L+  NP+PY+ +++   ++  +  +SPE F+R+    + E  PI GTI RG  P  D +  L+L  S+KD++E  M  D+ RND  RVC PGSV V     +E Y+ +   V  I G+   ++ A     +     ++TGAP
Sbjct:  246 GEYAELVVKAKESFRRGDLFEVVPGQKFYERCESRPS-EISNRLKAINPSPYSFFINLGNQEYLVG-ASPEMFVRVSGRRI-ETCPISGTIKRGDDPIADSEQILKLLNSKKDESELTMCSDVDRNDKSRVCVPGSVKVIGRRQIEMYSRLIHTVDHIEGRLRDDMDAFDGFLSHAWAVTVTGAP 427          
The following BLAST results are available for this feature:
BLAST of FC923149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
TRPE_HELPY2.552e-1627.40Anthranilate synthase component 1 OS=Helicobacter ... [more]
TRPE_BUCTC1.266e-1529.47Anthranilate synthase component 1 OS=Buchnera aphi... [more]
TRPE_HELPJ1.654e-1529.61Anthranilate synthase component 1 OS=Helicobacter ... [more]
TRPE_CORGL8.209e-1535.22Anthranilate synthase component 1 OS=Corynebacteri... [more]
TRPE_RHIME5.321e-1430.27Anthranilate synthase OS=Rhizobium meliloti GN=trp... [more]

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Properties
Property NameValue
Genbank descriptionC31701F04EF StrClemenN Citrus clementina cDNA clone C31701F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923149 ID=FC923149; Name=FC923149; organism=Citrus clementina; type=EST; length=746bp
AGAACAGAAGCTTATTGGCTTAAGAGCTTCTTCACAAGGCAGTTGGAGGA
GCAGAATTTACATGCTCCAACAGTTTCTCGAAATAAATCAGCCTTTATTT
CTGAGGTATCAAGAGGGGACTACGTAAACAATGTTGAGAACTGTCTGAAA
TACATAAAAGATGGAGAAAGCTATGAGTTATGTCTTACAACCCAGCTACG
AAAAAGAATTGGGGAAATAGATTCTTTGGGGCTTTACCTTCACCTTAGAG
AAAAAAATCCAGCACCATATGCTGCCTGGCTTAGTTTTTCTAAGGAGGAT
TTATGCATTTGTTGTTCTTCTCCTGAGAGGTTTCTACGATTGGATAAGAA
TGACTTATTAGAAGCAAAACCCATCAAGGGTACCATAGCTCGTGGATCCA
CACCAGAAGAAGATGAACAGCTCAAATTGCAACTGCAGTATAGTGAAAAG
GATCAGGCTGAAAATTTGATGATAGTGGATCTTCTAAGGAATGACCTTGG
TCGTGTCTGTGAGCCGGGATCTGTACATGTCCCAAATCTCATGAATGTGG
AATCATATGCAACAGTTCACACCATGGTGAGTACAATCTGTGGGAAAAAG
CATTCAAATGTTAGTGCAGTTTATTGTGTCAGAGCAGCATTCCCAGGTGG
TTCAATGACTGGTGCACCAAGTTGAGGTCGATGGGAATTCTGAGTCTATT
GAGAGTGTTCTCGGGGTACTACTCTGGCTCATTGGGTATTCTCATA
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