FC923150

Overview
NameFC923150
Unique NameFC923150
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923150 vs. ExPASy Swiss-Prot
Match: YNIA_ECOLI (Uncharacterized protein yniA OS=Escherichia coli (strain K12) GN=yniA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 43/140 (30.71%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:  185 GGCINLASRYGTDAGSFFVKTN-RSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQS-VFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSDWIEFYAEHRLGYQLKLALDQ 598
            GG ++ A         FFVK + R + P  F  EA  L  +  ++T+  P+ + VGA     S+++M+++       + + + G+++A +H+     + FG D DN + +TPQ N W   W  F+AE R+G+QL+LA ++
Sbjct:   26 GGEVHAAWHLRYAGHDFFVKCDERELLPG-FTAEADQLELLSRSKTVTVPKVWAVGA-DRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQ-FGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEK 162
The following BLAST results are available for this feature:
BLAST of FC923150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YNIA_ECOLI4.828e-1130.71Uncharacterized protein yniA OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC31701F05EF StrClemenN Citrus clementina cDNA clone C31701F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923150 ID=FC923150; Name=FC923150; organism=Citrus clementina; type=EST; length=692bp
GAGAGATGATGGCACAACACACGTGGGATTCCTCTCTTTCGGCTCTTTTC
TTCCTCTTCCTTCTCGAATCTCCTTCAGCAAACGCAGACCATTTGCCATG
GCAGCATTGAGTGATGACCCTATCCGTGAATGGATTCTTTCTGAAGGAAA
GGCTACCCATATTACAAAGATTTGTCCTGTTGGTGGTGGTTGCATTAATC
TTGCTAGTCGTTATGGCACAGATGCTGGTTCTTTCTTTGTTAAAACTAAC
AGGAGCATTGGACCATCTATGTTTGAGGGAGAGGCTCTTGGTCTCGGTGC
TATGTATGAAACGAGAACAATTCGAGCACCTAGGCCATTTAAGGTTGGAG
CTCTACCAACTGGTGGATCATATATCATTATGGAATTCATTGAGTTTGGT
TCTTCTAGAGGCAATCAGTCTGTATTTGGGAAGAAGCTTGCTGAAATGCA
TAAAGCTGGGAAGTCCAGTAAAGGTTTTGGTTTTGATGTTGATAATACCA
TTGGAAGTACCCCCCAGATAAACAAATGGACATCCGATTGGATTGAGTTT
TATGCAGAGCATAGATTAGGTTACCAGCTTAAGTTAGCATTAGACCAGTA
TGGCGATTCAACTATTTACCAAAGAGGGCACAGACTGATGAAGAACTTGG
CACCTCTCTTTGAANGGGTCAATGTAGAGCCATGCTTGCTGC
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