FC923152

Overview
NameFC923152
Unique NameFC923152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923152 vs. ExPASy Swiss-Prot
Match: YCEI_BACSU (Putative metabolite transport protein yceI OS=Bacillus subtilis GN=yceI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  208 IAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVISSIVSGLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGIVALIVSSAFDHQ 708
            +AG+G+  DA D+  +S +   L     HV+       L P     +  V   G  AG   FG L D++GRKKV+ ITL+   I S +S      SA          RF +G G+GG+ P+++T++SE    + RG  I  + +    G L+  +++  V  +F  Q
Sbjct:   15 VAGLGWLFDAMDVGILSFIIAAL-----HVEW-----NLSPEEMKWIGSVNSIGMAAGAFLFGLLADRIGRKKVFIITLLCFSIGSGISAFVTSLSA------FLILRFVIGMGLGGELPVASTLVSEAVVPEKRGRVIVLLESFWAVGWLAAALISYFVIPSFGWQ 165          
BLAST of FC923152 vs. ExPASy Swiss-Prot
Match: PROP_SALTY (Proline/betaine transporter OS=Salmonella typhimurium GN=proP PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 52/184 (28.26%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  199 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLA--------GQLFFGWLGDKLGRKKVYGITLILMVISSIVSGLSFGKSAKGVIA--TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF---AMQGFGILSGGIVALIVSSAFDHQF 711
            AI  A +G   + +D      V   LG++++            P    +V  +A   T +        G LFFG LGDK GR+K+  IT+++M IS+   GL    +  G+ A   L   +   GF +GG+Y  ++  ++EY+  + RG F+ +     ++ GF +L  G+V LI +   +  F
Sbjct:   26 AITAASLGNAMEWFDFGVYGFVAYALGKVFF------------PGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGF-VLGAGVVVLISTIVGEENF 195          
The following BLAST results are available for this feature:
BLAST of FC923152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
YCEI_BACSU3.192e-1330.54Putative metabolite transport protein yceI OS=Baci... [more]
PROP_SALTY6.655e-1128.26Proline/betaine transporter OS=Salmonella typhimur... [more]

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Properties
Property NameValue
Genbank descriptionC31701F07EF StrClemenN Citrus clementina cDNA clone C31701F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923152 ID=FC923152; Name=FC923152; organism=Citrus clementina; type=EST; length=716bp
GGAGACTATTCTGCCCTTTCACTCACTTATTAAATAGCAGGCCAACACAA
CCAAATTCTCACCATCCCCCTTCCTTCCTTCGCTGCAAGTACAGGAAAGA
AGGCATAGTATCTAGCATTCTAGCTAGCCATGGCTGGAGATCAACTGACA
GTGCTTAATGCACTTGATGTAGCAAAGACTCAATTGTACCATTTCACAGC
AATTGTAATTGCTGGAATGGGATTCTTCACAGATGCATACGACTTGTTTT
GCATCTCCTTGGTCACGAAGTTACTCGGTCGCATCTACTACCACGTCGAT
GGTGCAAAAAAGCCCGGTACATTGCCTCCCAACGTGTCAGCTGCTGTAAA
CGGCGTCGCGTTGTGTGGTACTTTAGCCGGCCAGCTCTTCTTCGGATGGC
TTGGCGACAAATTAGGCCGCAAAAAAGTTTACGGGATAACACTAATCCTC
ATGGTCATCAGCTCAATTGTCTCCGGACTTTCCTTCGGAAAATCCGCAAA
GGGTGTCATTGCAACTCTTTGCTTTTTCAGGTTTTGGCTTGGTTTCGGTA
TTGGTGGTGACTATCCGCTATCAGCTACAATTATGTCTGAATACGCAAAC
AAGAAGACTCGCGGTGCTTTCATTGCTGCGGTGTTCGCTATGCAAGGATT
TGGGATTTTATCTGGAGGGATTGTGGCTCTAATAGTTTCATCAGCGTTTG
ATCATCAATTCAGGCC
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