FC923153

Overview
NameFC923153
Unique NameFC923153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923153 vs. ExPASy Swiss-Prot
Match: SCP11_ARATH (Serine carboxypeptidase-like 11 OS=Arabidopsis thaliana GN=SCPL11 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 57/245 (23.27%), Postives = 105/245 (42.86%), Query Frame = 3
Query:    6 GTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT---DPGVQYKAYPDYALDMGIINKSQYNRISKIIPVCELAIKLCGTDGTLSCLASYFVCNSVFSSIIAIAGDINYYDIRKKCVGSLCYDFSNMEKFLNDKSVREAIGVGDIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLED---GVKLLVYAGRYDLI 722
            G GFSY+         + G    +++FLQ +  +HP+ + N FY  G+SY+G  +PA    +  GN       INLKG+ +GN +T   DP  +      ++  M +I+   Y  I +        +    T   L  +  +  C    +    ++ D +             Y F  +  + ND+SVR+A+ V            Y  +   + ++++  +P  + +   G + L+Y+G +DL+
Sbjct:  128 GAGFSYSRAPLIDTPTDTGEVKRIHEFLQKWLSKHPQFSSNHFYAGGDSYSGMIVPALVQEISKGNYICCNPPINLKGYVLGNPITHEDDPNYRI----PFSHGMALISDELYESIREACKGNYFNVDPRNTK-CLKLVEEFHKCTDKLNEFHILSPDCD-----TASPDCYLYPFYLISFWANDESVRDALHVNKRSIGKWERCNY--LSKPYNKDIKSSVPYHMNNSVSGYRSLIYSGDHDLV 360          
BLAST of FC923153 vs. ExPASy Swiss-Prot
Match: YSS2_CAEEL (Uncharacterized serine carboxypeptidase K10B2.2 OS=Caenorhabditis elegans GN=K10B2.2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 72/277 (25.99%), Postives = 113/277 (40.79%), Query Frame = 3
Query:    6 GTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLTDPGVQYKAYPDYALDMGIINKSQYNRISKIIPVCELAIKLCGTD-GTLSCLASYFVCNSVFSSIIAIAG--DINYYDIRKKC--------------------VG------------SLCYDFSNMEKFLNDKSVREAIGVGDI--EFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGRYDLIC 725
            G G+SY+++  ++  +++ VS   Y  L  F  + P+    DF+ITGESYAG YIP  A R+ N  K       N KG AIGNG  +    Y     +     ++    YN         ++A   C  + GT    + +F  N     I A+ G  ++N Y++   C                    VG             LC   +N   +LN   VR+++ +      +  CS  V +  +V    N+      ++  G+K+LVY G  D  C
Sbjct:  122 GVGYSYSTNF-NLTVSDDEVSLHNYMALLDFLSKFPEYKGRDFWITGESYAGVYIPTLAVRILNDKKN----FPNFKGVAIGNGALNFPNNYNTMVPFYYYHALVRDDLYN---------DIARNCCNNNIGTCDIYSKFFDPNCRDKVINALDGTNELNMYNLYDVCYYNPTTNLKKAFIERQMRIAVGLPARKHNAATTVPLCAQTNNTHVYLNRADVRKSLHIPSSLPAWEECSDQVGKNYVVTHF-NVIPEFQTMIAAGIKILVYNGDVDTAC 383          
BLAST of FC923153 vs. ExPASy Swiss-Prot
Match: SCP39_ARATH (Serine carboxypeptidase-like 39 OS=Arabidopsis thaliana GN=SCPL39 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    6 GTGFSYTSDKRDIRH-NENGVSNDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAAR--VHNGNKAKEGIHINLKGFAIGNGLTDPGVQYKAYPDYALDMGIINK 326
            GTGFSYT+ + D+ +  +   + D Y FL  + E  P+    +FYI GESYAGHY+P  A    VHN N+      INL+G  IGN   +  V+     DY +   ++++
Sbjct:  177 GTGFSYTNTESDLENPGDMKAAADKYIFLVKWLERFPEYKGREFYIAGESYAGHYVPQLAQTILVHNKNQN----FINLRGILIGNPTLNDIVETTGSFDYLVSHALLSQ 282          
The following BLAST results are available for this feature:
BLAST of FC923153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
SCP11_ARATH1.384e-1123.27Serine carboxypeptidase-like 11 OS=Arabidopsis tha... [more]
YSS2_CAEEL1.808e-1125.99Uncharacterized serine carboxypeptidase K10B2.2 OS... [more]
SCP39_ARATH1.808e-1137.27Serine carboxypeptidase-like 39 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701F08EF StrClemenN Citrus clementina cDNA clone C31701F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923153 ID=FC923153; Name=FC923153; organism=Citrus clementina; type=EST; length=730bp
CTACTGGGACTGGGTTTAGTTACACTTCTGATAAACGTGACATTCGTCAC
AATGAAAATGGAGTTAGTAATGACCTCTATGACTTCTTACAGGCCTTCTT
TGAGGAGCATCCTAAGCTTGCAGAGAATGACTTCTATATAACTGGGGAAT
CATATGCTGGGCACTATATTCCTGCATTTGCTGCTCGAGTGCACAATGGG
AACAAAGCTAAAGAAGGCATTCATATTAATTTGAAGGGTTTTGCCATTGG
TAACGGGCTTACTGATCCCGGTGTCCAGTACAAAGCTTACCCAGATTATG
CATTGGATATGGGGATTATTAACAAATCACAGTACAATCGTATCAGCAAG
ATCATCCCAGTGTGTGAACTGGCGATAAAGCTTTGTGGCACTGATGGTAC
CCTTTCTTGCTTGGCTTCATATTTTGTTTGCAATAGTGTATTCAGTAGTA
TCATAGCAATTGCTGGTGATATAAATTACTATGACATTAGAAAGAAGTGT
GTTGGGAGCCTCTGCTATGACTTCTCGAACATGGAGAAATTCCTCAATGA
TAAATCTGTCAGGGAAGCTATTGGTGTTGGGGACATAGAGTTTGTGTCTT
GCAGCCCTACAGTGTATCAGGCTATGCTTGTAGACTGGATGAGGAACCTT
GAAGTTGGAATTCCGGGACTTCTCGAGGATGGAGTCAAGTTGCTTGTATA
TGCCGGAAGATACGATCTCATTTGCACTGG
back to top