FC923196

Overview
NameFC923196
Unique NameFC923196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOPE (Phosphatidylserine decarboxylase proenzyme OS=Clostridium perfringens GN=psd PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.213e-35
Identity = 84/209 (40.19%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            I  F++ F   ++L +    ++ F+ FN+FF R L P ARPID  E   + +   D RL AF++++      IKG  +S++ L+ +   +  F  GT +I RL P DYHRFH   SG   +   I G  Y+VNPIA+N+    +F +NKR  SI ++ +FG++  V +GAT VG+I    +    VKKG+E GYF FGGST I  F+KD
Sbjct:   62 IKAFIDEFNIDMSLCNKN--IDEFENFNDFFARTLTPEARPIDYSEN--ILISPGDGRLSAFENIDLDKVVQIKGYTYSLKELIDDPKVAEEFEGGTCLILRLCPTDYHRFHFVDSGTCSESKKISGFYYSVNPIALNN-VSELFCKNKREWSIFNSDNFGEILHVEVGATCVGTILQTYSPEKRVKKGEEKGYFKFGGSTTILFFKKD 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOBM (Phosphatidylserine decarboxylase proenzyme OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=psd PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 82/209 (39.23%), Postives = 125/209 (59.81%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            I KF+N F+  ++L++ +  L     FN+FF R+LK  ARPI     + + +   D +++A++++  +    +KG  +S   L+ ND  +  + NGT ++ RL P DYHRFH   +GI E  + + G  Y+VNPIA+ SK  +VF +NKR  SI  + +FG + F+ +GAT VGSI         + KGDE GYF FGGSTVI  F+++
Sbjct:   62 INKFINDFEIDMSLSENQ--LSDLTCFNDFFTRKLKKEARPIKA--DKNLLISPGDGKILAYENLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLVLRLCPTDYHRFHFIDNGICENTIKLKGFYYSVNPIAL-SKIPSVFCKNKREYSIFYSENFGDIIFMEVGATCVGSIIQTYKPNTKILKGDEKGYFKFGGSTVILFFKEN 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CHLPN (Phosphatidylserine decarboxylase proenzyme OS=Chlamydia pneumoniae GN=psd PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 80/206 (38.83%), Postives = 126/206 (61.17%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVF 618
            I  F+N +K  I+  ++  P+  F +FN+FF R+LKP ARPI  +  +EV +   D R + + +V +  +F +K + FS+  LLG+   +  + +G++V  RLAP DYHRFH P   + ++   + G L++V+P+AV   +  +F ENKR V+++ T  FG V ++ +GA  VGSI    +      KGDE G+F+FGGSTVI +F
Sbjct:   64 IRPFMNRYK--ISEKELTKPVADFTSFNDFFTRKLKPEARPI--VGGKEVFITPVDGRYLVYPNVSEFDKFIVKSKAFSLPKLLGDHELTKLYAHGSIVFARLAPFDYHRFHFPCDCLPQKTRCVNGALFSVHPLAVKDNFI-LFCENKRTVTVLETEQFGNVLYLEVGAMNVGSIVQTFSPNQTYAKGDEKGFFAFGGSTVILLF 264          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOBA (Phosphatidylserine decarboxylase proenzyme OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=psd PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 85/209 (40.67%), Postives = 118/209 (56.46%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            IP FV  F   +N+A+    +  F +FN+FF+R L P +RPID    E + +   D R+  + +++      IKG  +S++ L+ ND  + ++ +G  +I RL P DYHRFH   SGI  +   I G  Y+VNPIA+NS    +F ENKR  +I  + +FG +  V +GAT VGSI         V KG E GYF FGGST I   EKD
Sbjct:   62 IPDFVENFNIDMNIAEKN--ISDFNSFNDFFVRNLIPTSRPIDT--NENILISPGDGRITVYDNIDLDNIVQIKGLTYSLRELIKNDQITENYKDGICIILRLCPTDYHRFHFVDSGIPCETHKIKGHYYSVNPIALNS-IPKLFCENKREWNIFKSENFGDILTVEVGATCVGSIIQTYEPNKRVLKGAEKGYFKFGGSTTILFLEKD 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_DESHY (Phosphatidylserine decarboxylase proenzyme OS=Desulfitobacterium hafniense (strain Y51) GN=psd PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 79/201 (39.30%), Postives = 119/201 (59.20%), Query Frame = 1
Query:   25 KDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            K  ++L+  +  L+ F +FN+FF R+LKP AR ID  +   +++   D +L+A++ ++      +KG  +S++ L+ +   ++ +  GT +I RL P DYHRFH   SGI E    I G  Y+VNP+A+  K   +F ENKR  SI  + HFG +  + +GAT VGSI         V +GDE GYF FGGSTV+  FE++
Sbjct:   68 KFDLDLSIAEKNLKEFSSFNDFFYRKLKPSARSIDPCQDSLISL--GDGKLLAYEDIDLDCLVQVKGLTYSLKELIKDPETASKYKRGTCLILRLCPTDYHRFHFIDSGICEPSHRIKGSYYSVNPVALQ-KVAKLFCENKREWSIFHSDHFGDILTIEVGATFVGSIIQSYTPHQPVARGDEKGYFKFGGSTVLLFFEEN 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CHLAB (Phosphatidylserine decarboxylase proenzyme OS=Chlamydophila abortus GN=psd PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 80/207 (38.65%), Postives = 120/207 (57.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFE 621
            IP FV   ++ IN+ D K  L  F +FN+FF REL P ARPI   + + + V   D   + + ++ +   F +K ++FS+  LLG+      + +G++V  RLA  DYHRFH PV  +      I G L++V+P+A+   + N+F ENKR ++ + T  FG V ++ +GA  VGSI      G+   KGDE G+F  GGSTVI +F+
Sbjct:   64 IPGFVK--RNHINIKDFKKSLSEFSSFNDFFTRELLPEARPI--AQGDNICVTPVDGAYLIYSNIAEFGEFVVKSKRFSLSKLLGDPRLVEKYASGSVVFARLALFDYHRFHFPVDCLPGPTRTINGYLFSVHPMALKDNF-NIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYKPGEKYSKGDEKGFFEIGGSTVIVLFQ 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOK5 (Phosphatidylserine decarboxylase proenzyme OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=psd PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.764e-34
Identity = 82/198 (41.41%), Postives = 114/198 (57.58%), Query Frame = 1
Query:   34 INLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            IN+ D     ++FK FN+FF R LK  +R ID    E+V +   D RL  +++++ +    IKG  +S+  L+ +   +  F  GT +I RL P DYHRFH    GI +    I G  Y+VNPIA+ +   N+F  NKR  SI  + +FG + +V +GAT VGSI      G  V KGDE GYF FGGST+I  FE++
Sbjct:   71 INMDDYIEQTDNFKCFNDFFSRALKNNSRSID--RDEKVLISPGDGRLQVYENIDLNKIVQIKGFTYSLYNLINDIEIAKRFYKGTCLILRLCPTDYHRFHFIDYGICDFTHKIKGNYYSVNPIALRN-ISNIFCRNKREWSIFHSKNFGDILYVEVGATCVGSIVQTYFPGKHVSKGDEKGYFKFGGSTIILFFEQN 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOK1 (Phosphatidylserine decarboxylase proenzyme OS=Clostridium kluyveri (strain NBRC 12016) GN=psd PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.764e-34
Identity = 82/198 (41.41%), Postives = 114/198 (57.58%), Query Frame = 1
Query:   34 INLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            IN+ D     ++FK FN+FF R LK  +R ID    E+V +   D RL  +++++ +    IKG  +S+  L+ +   +  F  GT +I RL P DYHRFH    GI +    I G  Y+VNPIA+ +   N+F  NKR  SI  + +FG + +V +GAT VGSI      G  V KGDE GYF FGGST+I  FE++
Sbjct:   71 INMDDYIEQTDNFKCFNDFFSRALKNNSRSID--RDEKVLISPGDGRLQVYENIDLNKIVQIKGFTYSLYNLINDIEIAKRFYKGTCLILRLCPTDYHRFHFIDYGICDFTHKIKGNYYSVNPIALRN-ISNIFCRNKREWSIFHSKNFGDILYVEVGATCVGSIVQTYFPGKHVSKGDEKGYFKFGGSTIILFFEQN 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_DESHD (Phosphatidylserine decarboxylase proenzyme OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=psd PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.832e-34
Identity = 79/201 (39.30%), Postives = 118/201 (58.71%), Query Frame = 1
Query:   25 KDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            K  ++L+  +  L+ F +FN+FF R+LKP AR ID  +   +++   D +L+A++ +       +KG  +S++ L+ +   ++ +  GT +I RL P DYHRFH   SGI E    I G  Y+VNP+A+  K   +F ENKR  SI  + HFG +  + +GAT VGSI         V +GDE GYF FGGSTV+  FE++
Sbjct:   68 KFDLDLSIAEKNLKDFSSFNDFFYRKLKPSARSIDPCQDSLISL--GDGKLLAYEDINLDCLVQVKGLTYSLKELIKDPETASKYKRGTCLILRLCPTDYHRFHFIDSGICEPSHRIKGSYYSVNPVALQ-KVAKLFCENKREWSIFHSDHFGDILTIEVGATFVGSIIQSYTPHQPVARGDEKGYFKFGGSTVLLFFEEN 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOPA (Phosphatidylserine decarboxylase proenzyme OS=Clostridium pasteurianum GN=psd PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 81/207 (39.13%), Postives = 118/207 (57.00%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFE 621
            I KF   F   IN++  +     FK+FN+FF R+L   +RPI   + +   +   D +++ + ++  +    +KG  + +  L+ ND  S ++  GT +I RL P DYHRFH   +GI E  + I G  Y+VNPIA+N K  N+F +NKR  SI ++ +FGK+ +V IGAT VGSI         V KG E GYF FGGST++   E
Sbjct:   62 IKKFATDFN--INMSHSEKSFNDFKSFNDFFSRKLIKSSRPI--ADNKNFLISPCDGKIIVYNNINMNNIIQVKGITYKLNDLIQNDSISKTYEKGTCIIARLCPTDYHRFHFLDNGICESTIKIKGNYYSVNPIALN-KINNLFCQNKREWSIFNSDNFGKILYVEIGATCVGSIIQTYMPNKKVLKGMEKGYFKFGGSTIVLFLE 263          
The following BLAST results are available for this feature:
BLAST of FC923196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSD_CLOPE5.213e-3540.19Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_CLOBM8.892e-3539.23Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_CHLPN8.892e-3538.83Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_CLOBA1.517e-3440.67Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_DESHY4.413e-3439.30Phosphatidylserine decarboxylase proenzyme OS=Desu... [more]
PSD_CHLAB4.413e-3438.65Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_CLOK55.764e-3441.41Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_CLOK15.764e-3441.41Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_DESHD9.832e-3439.30Phosphatidylserine decarboxylase proenzyme OS=Desu... [more]
PSD_CLOPA1.284e-3339.13Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]

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Properties
Property NameValue
Genbank descriptionC31702B03EF StrClemenN Citrus clementina cDNA clone C31702B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923196 ID=FC923196; Name=FC923196; organism=Citrus clementina; type=EST; length=627bp
ATCCCAAAGTTTGTAAACTTCTTTAAGGATCAAATCAACTTGGCTGATGT
TAAGTACCCTTTGGAACATTTTAAGACATTTAATGAATTCTTCATTAGAG
AGTTAAAACCGGGTGCAAGACCAATTGATTGCATGGAACGTGAAGAGGTT
GCTGTATGTGCAGCTGATAGTCGTCTGATGGCTTTTAAATCGGTTGAAGA
CAGCCTTAGATTTTGGATCAAGGGTCAAAAGTTTTCAATTCAAGGTCTTT
TGGGAAATGACATATGTTCCAATTCTTTTTTAAATGGAACTATGGTGATT
TTTCGGTTGGCGCCACAGGATTATCATCGTTTTCATCTTCCGGTGTCGGG
AATCATTGAGCAATTTGTGGATATACCTGGATGCCTATACACTGTTAATC
CCATTGCTGTTAATAGCAAATATTGCAATGTTTTTACGGAGAACAAGCGT
GTTGTATCAATTATTTCGACTGCACATTTCGGAAAGGTAGCCTTTGTAGC
AATTGGTGCAACCATGGTTGGTAGCATCACTTTTCTGAAGAACACGGGTG
ACTTTGTCAAAAAAGGAGATGAGTTTGGATATTTCTCATTTGGTGGGAGC
ACAGTAATTTGTGTATTTGAAAAGGAT
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