FC923196

Overview
NameFC923196
Unique NameFC923196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_HELPS (Phosphatidylserine decarboxylase proenzyme OS=Helicobacter pylori (strain Shi470) GN=psd PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 70/221 (31.67%), Postives = 101/221 (45.70%), Query Frame = 1
Query:   10 FVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITF------------------LKNTGDFVKKGDEFGYFSFGGSTVICV 615
            +V  FK  I+L++ + PLE++K+ N  F R LK   RP D      +A C A     AF   + +L+  IKG  +    L+G  +  S SF     V F L+P+DYH +H P    I +     G L  VN  +++ K  N+F  N+RV  +       ++ FVA+GA  VG + F                    N    VKKGD  G F  G + V+ V
Sbjct:   32 YVKIFK--IDLSEFE-PLENYKSLNALFTRSLKK-ERPFDKTPNACIAPCDALITECAFLDNDSALQ--IKGMPYKAHELVGEINPLSPSFF---YVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLH-KNKNLFVGNERVALVAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKAHLTQAYSYNPPIKVKKGDNLGNFEMGSTIVLFV 242          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_HELP2 (Phosphatidylserine decarboxylase proenzyme OS=Helicobacter pylori (strain P12) GN=psd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.609e-13
Identity = 71/231 (30.74%), Postives = 100/231 (43.29%), Query Frame = 1
Query:    7 KFVNFFKDQINLADVKY---------PLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------------------TFLKNTGDFVKKGDEFGYFSFGGSTVICV 615
            KF +F +  IN    K          PLE++K+ N  F R LK   RP D      +A C A     AF   + +L+  IKG  +    L+G  +  S SF     V F L+P+DYH +H P    I +     G L  VN  +++ K  N+F  N+RV  +       ++ FVA+GA  VG +                  T+  N    VKKGD  G F  G + V+ V
Sbjct:   19 KFPSFIQKGINALYAKIFKVDLSEFEPLENYKSLNALFTRSLKK-ERPFDKAPNICIAPCDALITECAFLDNDSALQ--IKGMPYKAHELVGEINPLSPSFF---YVNFYLSPKDYHHYHAPCDLEILETRYFAGKLLPVNKPSLH-KNKNLFVGNERVALVTKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVLFV 242          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_HELPY (Phosphatidylserine decarboxylase proenzyme OS=Helicobacter pylori GN=psd PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 69/231 (29.87%), Postives = 100/231 (43.29%), Query Frame = 1
Query:    7 KFVNFFKDQINLADVKY---------PLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------------------TFLKNTGDFVKKGDEFGYFSFGGSTVICV 615
            KF +F +  IN   VK          PLE++++ N  F R LK   RP D      +A C A     AF   + +L+  IKG  +    L+G  +  S SF       F L+P+DYH +H P    I +     G L  VN  +++ K  N+F  N+RV  +       ++ FVA+GA  VG +                  T+  N    VKKGD  G F  G + V+ +
Sbjct:   19 KFPSFIQKGINALYVKIFKIDLSEFEPLENYRSLNALFTRSLKK-ERPFDKSPNICIAPCDALITECAFLDNDSALQ--IKGMPYKAHELVGEINPLSPSFFYAN---FYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLH-KNNNLFVGNERVTLVAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVLFI 242          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_HELPH (Phosphatidylserine decarboxylase proenzyme OS=Helicobacter pylori (strain HPAG1) GN=psd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 67/221 (30.32%), Postives = 101/221 (45.70%), Query Frame = 1
Query:   10 FVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------------------TFLKNTGDFVKKGDEFGYFSFGGSTVICV 615
            +V  FK  I+L++ + PLE++K+ N  F R LK   RP D      +A C A     AF   + +L+  IKG  +    L+G  +  + SF       F L+P+DYH +H P    I +     G L  VN  +++ K  N+F  N+RV  +       ++ FVA+GA  VG +                  T+  N    VKKGD  G F  G + V+ +
Sbjct:   32 YVKIFK--IDLSEFE-PLENYKSLNALFTRSLKK-ERPFDKAPNICIAPCDALITECAFLDNDSALQ--IKGMPYKAHELVGEINPLNPSFFYAN---FYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLH-KNNNLFVGNERVTLVAKDVQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVLFI 242          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PISD_BOVIN (Phosphatidylserine decarboxylase proenzyme OS=Bos taurus GN=PISD PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 64/233 (27.47%), Postives = 99/233 (42.49%), Query Frame = 1
Query:   61 LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICS-----------NSFLNGTMV---------IFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI--------------------------TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE 621
            L H++  +EFF R+LKP ARP+  +      +  +D +++ F  V++     +KG  +S++  LG    S           +SF +  +          +  LAP DYH FH P    +      PG L +VNP  +      +F  N+RVV      H G  +  A+GAT VGSI                          T     G  ++KG+  G F+  GST++ +FE
Sbjct:  166 LHHYRNLSEFFRRKLKPQARPVCGLHS---VISPSDGKILNFGQVKNCEVEQVKGVTYSLESFLGPRTPSEDLPFPPATPHSSFRSQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTVSHRRHFPGSLMSVNP-GMARWIKELFCHNERVVLTGDWKH-GFFSLTAVGATNVGSIRIYFDRDLHTNSPRYSKGSYNDFSFVTHANKEGIPMRKGEHLGEFNL-GSTIVLIFE 392          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CAMJE (Phosphatidylserine decarboxylase proenzyme OS=Campylobacter jejuni GN=psd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 64/227 (28.19%), Postives = 106/227 (46.70%), Query Frame = 1
Query:   10 FVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLM----AFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGT-MVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITF---------LKNTGDFV--------KKGDEFGYFSFGGSTVICVFEK 624
            +V +F   IN+++ K P E +++ N  F R L+   +       EE  +  +D +++     F + E+   F IKG  +S++ LL +    +   NG   V   L+P+DYHR+H P    I       G LY+VN   +  +  N++ +N+R VS+      G    V +GA  VG + F          K + +F         KKG+E G F   GST++ + +K
Sbjct:   31 YVKYFN--INMSEFKAPCE-YESLNALFTRTLQIPRK------FEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSVEELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL-ERISNLYVKNER-VSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRKYENLNFKKGEELGNFEL-GSTIVLISQK 245          
The following BLAST results are available for this feature:
BLAST of FC923196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSD_HELPS4.294e-1331.67Phosphatidylserine decarboxylase proenzyme OS=Heli... [more]
PSD_HELP25.609e-1330.74Phosphatidylserine decarboxylase proenzyme OS=Heli... [more]
PSD_HELPY9.567e-1329.87Phosphatidylserine decarboxylase proenzyme OS=Heli... [more]
PSD_HELPH1.249e-1230.32Phosphatidylserine decarboxylase proenzyme OS=Heli... [more]
PISD_BOVIN1.249e-1227.47Phosphatidylserine decarboxylase proenzyme OS=Bos ... [more]
PSD_CAMJE6.856e-1128.19Phosphatidylserine decarboxylase proenzyme OS=Camp... [more]

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Properties
Property NameValue
Genbank descriptionC31702B03EF StrClemenN Citrus clementina cDNA clone C31702B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923196 ID=FC923196; Name=FC923196; organism=Citrus clementina; type=EST; length=627bp
ATCCCAAAGTTTGTAAACTTCTTTAAGGATCAAATCAACTTGGCTGATGT
TAAGTACCCTTTGGAACATTTTAAGACATTTAATGAATTCTTCATTAGAG
AGTTAAAACCGGGTGCAAGACCAATTGATTGCATGGAACGTGAAGAGGTT
GCTGTATGTGCAGCTGATAGTCGTCTGATGGCTTTTAAATCGGTTGAAGA
CAGCCTTAGATTTTGGATCAAGGGTCAAAAGTTTTCAATTCAAGGTCTTT
TGGGAAATGACATATGTTCCAATTCTTTTTTAAATGGAACTATGGTGATT
TTTCGGTTGGCGCCACAGGATTATCATCGTTTTCATCTTCCGGTGTCGGG
AATCATTGAGCAATTTGTGGATATACCTGGATGCCTATACACTGTTAATC
CCATTGCTGTTAATAGCAAATATTGCAATGTTTTTACGGAGAACAAGCGT
GTTGTATCAATTATTTCGACTGCACATTTCGGAAAGGTAGCCTTTGTAGC
AATTGGTGCAACCATGGTTGGTAGCATCACTTTTCTGAAGAACACGGGTG
ACTTTGTCAAAAAAGGAGATGAGTTTGGATATTTCTCATTTGGTGGGAGC
ACAGTAATTTGTGTATTTGAAAAGGAT
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