FC923196

Overview
NameFC923196
Unique NameFC923196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ALKOO (Phosphatidylserine decarboxylase proenzyme OS=Alkaliphilus oremlandii (strain OhILAs) GN=psd PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 75/208 (36.06%), Postives = 120/208 (57.69%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK 624
            I +F+   +  ++ A+ + P E +K FN+FF R L+  +RPI   +  EV +  AD R+ A++ ++ +    +KG  + +  L  N+  +  +  G  ++ RL P DYHRFH P  G++     I G  Y+VNPIA+  K   ++ +NKR +S+  + +FG++  + +GAT VGSI      G  V+KG+E GYF FGGSTVI   +K
Sbjct:   63 ISRFIKELQIDMDEAERRNP-EEYKNFNDFFARTLRKESRPIT--KDPEVLISPADGRVFAYEHIDMNKVVQVKGSTYRLMDLFQNNELAREYDGGVCMVIRLCPADYHRFHFPDGGVVNYTKKIEGNYYSVNPIAL-KKIAQIYCQNKREISLFQSNNFGQMVLMEVGATCVGSIVQTYKEGQSVEKGEEKGYFKFGGSTVILFLKK 266          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CLOB8 (Phosphatidylserine decarboxylase proenzyme OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=psd PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.854e-32
Identity = 84/208 (40.38%), Postives = 118/208 (56.73%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK 624
            I  FV+ F   I++A  K  +  FK+FN+FF REL   ARPI+      + +   D R+ A++ ++      IKG  +S++ L+ +D  ++ + NG  V+ RL P DYHRFH   SGI  +   I G  Y+VNPIA+ S    +F ENKR  S+  + +F  V  + +GAT VGSI    +    V KGDE GYF FGGST I  FE+
Sbjct:   62 ISPFVDSFN--IDMAMSKKKINEFKSFNDFFTRELNFDARPIN--SDNNILISPGDGRITAYEDIDLDNIIQIKGLTYSLKELINDDNVASKYKNGICVVLRLCPTDYHRFHFIDSGIPYENHPIKGHYYSVNPIALKS-VPKLFCENKREWSLFKSDNFKDVLHIEVGATCVGSIIQTYSPRVRVNKGDEKGYFKFGGSTTILFFEQ 264          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBPA (Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus GN=psd PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 89/221 (40.27%), Postives = 122/221 (55.20%), Query Frame = 1
Query:   34 INLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKD 627
            +N+ + K+   +HFKTFNEFF+RELK GARPI   E +E+    AD+ +  F  +ED      KG  +S Q LLG D   +  F +G+     L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI      T     G+ V               KKG+E G F   GSTVI +F KD
Sbjct:   46 VNMDEAKHSDPKHFKTFNEFFVRELKEGARPIT--EGDEIITHPADACVSQFGPIEDGQLIQAKGHNYSAQELLGGDEKLAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPAEGDKAVILKKGEEMGRFKL-GSTVINLFAKD 261          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CHLCV (Phosphatidylserine decarboxylase proenzyme OS=Chlamydophila caviae GN=psd PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 76/207 (36.71%), Postives = 119/207 (57.49%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFE 621
            IP F+   K++I   + K  +  F +FN+FF REL+P ARPI     +++ V   D   + + ++ +   F +K ++FS+  LLG+      + +G++V  RLA  DYHRFH PV  +     +I G L++V+P+A+   + N+F ENKR ++ + T  FG V ++ +GA  VGSI           KG+E G+F  GGSTVI +FE
Sbjct:   64 IPGFIK--KNRICTKEFKKSISEFTSFNDFFTRELRPEARPI--ARGDDICVTPVDGAYLIYPNIAEFGEFVVKSKRFSLSKLLGDAKLVEKYASGSVVFARLALFDYHRFHFPVDCLAGPTRNINGYLFSVHPMALKDNF-NIFCENKRTLTELKTEKFGDVLYLEVGALNVGSIVQTYTAEKKYSKGNEKGFFEIGGSTVIVLFE 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBHB (Phosphatidylserine decarboxylase proenzyme OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=psd PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.677e-31
Identity = 89/221 (40.27%), Postives = 121/221 (54.75%), Query Frame = 1
Query:   34 INLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKD 627
            +N+ + K+   +HFKTFNEFF+RELK GARPI   E + V    AD+ +  F  +ED      KG  FS Q LLG D   +  F +G+     L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI      T     G+ V               KKG+E G F   GSTVI +F K+
Sbjct:   46 VNMDEAKHSDPKHFKTFNEFFVRELKDGARPI--AEGDAVITHPADACVSQFGPIEDGQLIQAKGHNFSAQELLGGDAKLAEEFQDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIEQVWAGTITPPRGNSVYKWDYPAEGDKAVILKKGEEMGRFKL-GSTVINLFVKN 261          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_CHLFF (Phosphatidylserine decarboxylase proenzyme OS=Chlamydophila felis (strain Fe/C-56) GN=psd PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31
Identity = 76/207 (36.71%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFE 621
            IP FV   ++ I + + K  L  F +FN+FF REL+P ARPI   + + + V   D   + + ++ +   F +K + FS+  LLG+      + +G++V  RLA  DYHRFH PV        ++ G L++V+P+A+   + N+F ENKR ++ + T  FG V ++ +GA  VGSI           KGDE G+F  GGSTVI +F+
Sbjct:   64 IPGFVK--RNHICVQEFKKSLSEFSSFNDFFTRELRPEARPI--AQGDNICVAPVDGAYLIYPNIAEFGEFVVKSKHFSLSKLLGDASLVEKYASGSVVFARLALFDYHRFHFPVDCWAGPTRNVNGYLFSVHPMALKDNF-NIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYAPEKRYSKGDEKGFFEIGGSTVIILFQ 265          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBVY (Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain YJ016) GN=psd PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 90/229 (39.30%), Postives = 120/229 (52.40%), Query Frame = 1
Query:    7 KFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDIC-SNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI--------------TFLK-------NTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            K  N   D+   AD K    H+KTFNEFF+RELK GARPI   E + +    AD+ +  F  + +      KG  FS Q LLG D   +  F +G+     L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI              T  K       N    +KKG+E G F   GSTVI +F KD
Sbjct:   42 KQYNVNMDEAKHADPK----HYKTFNEFFVRELKEGARPI--AEGDAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGDAALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILKKGEEMGRFKL-GSTVINLFAKD 261          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBVU (Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus GN=psd PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 90/229 (39.30%), Postives = 120/229 (52.40%), Query Frame = 1
Query:    7 KFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDIC-SNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI--------------TFLK-------NTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            K  N   D+   AD K    H+KTFNEFF+RELK GARPI   E + +    AD+ +  F  + +      KG  FS Q LLG D   +  F +G+     L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI              T  K       N    +KKG+E G F   GSTVI +F KD
Sbjct:   42 KQYNVNMDEAKHADPK----HYKTFNEFFVRELKEGARPI--AEGDAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGDAALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILKKGEEMGRFKL-GSTVINLFAKD 261          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBCM (Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain M66-2) GN=psd PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 83/208 (39.90%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   67 HFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEK 624
            HFKTFNEFF+RELK G RPI   E E+V    AD+ +  F ++E       KG  +S Q LLG D   +  F +G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI  +                      N    +KKG+E G F   GSTVI +F K
Sbjct:   58 HFKTFNEFFVRELKAGVRPI--AEGEKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLKKGEEMGRFKL-GSTVINLFAK 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBCH (Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae GN=psd PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 83/208 (39.90%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   67 HFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEK 624
            HFKTFNEFF+RELK G RPI   E E+V    AD+ +  F ++E       KG  +S Q LLG D   +  F +G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI  +                      N    +KKG+E G F   GSTVI +F K
Sbjct:   58 HFKTFNEFFVRELKAGVRPI--AEGEKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLKKGEEMGRFKL-GSTVINLFAK 260          
The following BLAST results are available for this feature:
BLAST of FC923196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSD_ALKOO1.284e-3336.06Phosphatidylserine decarboxylase proenzyme OS=Alka... [more]
PSD_CLOB81.854e-3240.38Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_VIBPA5.395e-3240.27Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_CHLCV9.202e-3236.71Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_VIBHB2.677e-3140.27Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_CHLFF7.790e-3136.71Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_VIBVY1.735e-3039.30Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_VIBVU1.735e-3039.30Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_VIBCM8.613e-3039.90Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_VIBCH8.613e-3039.90Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionC31702B03EF StrClemenN Citrus clementina cDNA clone C31702B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923196 ID=FC923196; Name=FC923196; organism=Citrus clementina; type=EST; length=627bp
ATCCCAAAGTTTGTAAACTTCTTTAAGGATCAAATCAACTTGGCTGATGT
TAAGTACCCTTTGGAACATTTTAAGACATTTAATGAATTCTTCATTAGAG
AGTTAAAACCGGGTGCAAGACCAATTGATTGCATGGAACGTGAAGAGGTT
GCTGTATGTGCAGCTGATAGTCGTCTGATGGCTTTTAAATCGGTTGAAGA
CAGCCTTAGATTTTGGATCAAGGGTCAAAAGTTTTCAATTCAAGGTCTTT
TGGGAAATGACATATGTTCCAATTCTTTTTTAAATGGAACTATGGTGATT
TTTCGGTTGGCGCCACAGGATTATCATCGTTTTCATCTTCCGGTGTCGGG
AATCATTGAGCAATTTGTGGATATACCTGGATGCCTATACACTGTTAATC
CCATTGCTGTTAATAGCAAATATTGCAATGTTTTTACGGAGAACAAGCGT
GTTGTATCAATTATTTCGACTGCACATTTCGGAAAGGTAGCCTTTGTAGC
AATTGGTGCAACCATGGTTGGTAGCATCACTTTTCTGAAGAACACGGGTG
ACTTTGTCAAAAAAGGAGATGAGTTTGGATATTTCTCATTTGGTGGGAGC
ACAGTAATTTGTGTATTTGAAAAGGAT
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