FC923196

Overview
NameFC923196
Unique NameFC923196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VIBC3 (Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=psd PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 83/208 (39.90%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   67 HFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEK 624
            HFKTFNEFF+RELK G RPI   E E+V    AD+ +  F ++E       KG  +S Q LLG D   +  F +G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI  +                      N    +KKG+E G F   GSTVI +F K
Sbjct:   58 HFKTFNEFFVRELKAGVRPI--AEGEKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLKKGEEMGRFKL-GSTVINLFAK 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_PSYIN (Phosphatidylserine decarboxylase proenzyme OS=Psychromonas ingrahamii (strain 37) GN=psd PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 87/229 (37.99%), Postives = 125/229 (54.59%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            I KF+N F   +++++ KY   E+FKTFN+FF RELKP AR I  +  E+      D  +     +++   F  KG  FS++ LLG  D  +  F  G      LAP+DYHR H+P++G +EQ + IPG L++VNP+   +   N+F  N+R V+I STA  G VA V +GAT+V SI  +                  KN    ++KG E G F   GSTV+ +F K+
Sbjct:   38 IKKFINKFN--VDMSEAKYSDPEYFKTFNDFFTRELKPEARQI--IAGEDNLAHPVDGAVSQMGDIKEGRLFQAKGHDFSLRELLGGRDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFIPGDLFSVNPLTAQN-VPNLFARNERAVAIFSTA-VGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKGAEMGRFKL-GSTVVALFPKE 259          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD2_CLOAB (Phosphatidylserine decarboxylase proenzyme 2 OS=Clostridium acetobutylicum GN=psd2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 73/208 (35.10%), Postives = 121/208 (58.17%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK 624
            I  F+N +K  ++    +Y  + + +F++FF R++  G R     + +   +  ADS+LM ++ ++D L+  IK   +++  LL ++  S  + NGT +IFRL   DYHR+     G ++    I G L+TV PI  +SK   V++EN R  S++ T +FGKV  + +GA +VG I    ++    KKGDE GYF FGGST++ +F++
Sbjct:   63 IEPFINEYKIDMS----EYEKKEYTSFDDFFTRKILEGKRSFS--KEKSHLISPADSKLMVYE-IDDDLKMNIKNSIYTVGELLNDEKLSREYKNGTCLIFRLTVDDYHRYCFIDDGSLKYRKVINGRLHTVGPI--SSKRYKVYSENNREYSVLKTRNFGKVIQIEVGALLVGKIK--NHSIKVFKKGDEKGYFCFGGSTIVLLFKE 259          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_IDILO (Phosphatidylserine decarboxylase proenzyme OS=Idiomarina loihiensis GN=psd PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.375e-27
Identity = 80/228 (35.09%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   10 FVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGD---------------FVKKGDEFGYFSFGGSTVICVFEKD 627
            F+  +K  ++ A  + P + +KTFN FF R LKP  RP++  E E       D  +     +E+   F  KG  +S+Q LLG N+  +  F++G      LAP+DYHR H+P  G++++ + +PG LY+VNP+   +   N+F  N+RVV+I  T   G ++ V +GAT+V SI      T    TG                 +KKG+E G+F   GSTV+  F KD
Sbjct:   43 FIRQYKIDMSEAIEESP-KAYKTFNAFFTRHLKPELRPLEASESE--LAHPVDGAVSQLGDIENGRIFQAKGHDYSLQELLGGNEEDAKPFVDGKFATIYLAPKDYHRIHMPCDGVLKKMIYVPGDLYSVNPLTA-ANVPNLFARNERVVAIFDT-EVGPMSLVLVGATIVASIGTVWSGTITPPTGGRIQSWSYPTSGHSAIHLKKGEEMGHFKL-GSTVVLTFAKD 264          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ALTMD (Phosphatidylserine decarboxylase proenzyme OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=psd PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.375e-27
Identity = 85/233 (36.48%), Postives = 120/233 (51.50%), Query Frame = 1
Query:   10 FVNFFKDQINLADVKYPL----EHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN--DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKD 627
            F+  F  Q N+ D+   L    EH+++FN+FF R LKP AR ID  E ++V + A D  +  F  +     F  KG  FS+  LLG   D+ +  F NG      LAP+DYHR H+P+ G +   + +PG L++VNP+   +    +F  N+RVV++  T   GK+A V +GAT+V SI      T    TG  V               +KG E G F  G + V+C FEKD
Sbjct:   37 FIKLFIKQYNV-DMTEALHEKPEHYRSFNKFFTRTLKPEARTID--ESDDVLIHAVDGTVSQFGDIRSDSIFQAKGHDFSLTTLLGGKPDVAA-PFKNGKFATVYLAPRDYHRIHMPIEGTLTDMLYVPGELFSVNPLTAQN-IPGLFARNERVVALFDTP-VGKMAMVLVGATIVASIETVWAGTVTPPTGKTVQHWSYETDSEAAVKLEKGAELGRFKLGSTIVVC-FEKD 262          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_PHOPR (Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum GN=psd PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.063e-27
Identity = 81/208 (38.94%), Postives = 109/208 (52.40%), Query Frame = 1
Query:   70 FKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND-ICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKD 627
            + TFN FFIRELK GARPI+    + +    AD+ +     +++   F  KG  F    LLG D   +  F++G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  TAH G +A V +GAT+VGSI      T    TG  V               KKG E G F   GSTVI +F KD
Sbjct:   60 YSTFNHFFIRELKEGARPIN--NDDNIISHPADACVSQLGPIKEGRLFQAKGHYFDACELLGGDKALAEEFVDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAQN-VPNLFARNERVVCIFDTAH-GPIAQVLVGATIVGSIETVWAGTVTPPTGPEVRRWDYPATGTQAIVLKKGQEMGRFKL-GSTVINLFPKD 262          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHEAM (Phosphatidylserine decarboxylase proenzyme OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=psd PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.164e-26
Identity = 84/231 (36.36%), Postives = 118/231 (51.08%), Query Frame = 1
Query:   10 FVNFFKDQ--INLADVKYPL-EHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNS-FLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKD 627
            F+ +F  Q  IN+++  +   E +KTFN+FF RELKPG RPID  + E++ V   D  +     +ED   F  KG  +S   LLG      + F  G      LAP+DYHR H+P+ G + +   +PG L++VNP+   +    +F  N+RVV+I  T   G +A V +GAT+V SI      T    TG  V               +KG E G F   GSTV+ +F KD
Sbjct:   36 FIKWFIKQYGINMSEALHSNPEAYKTFNDFFTRELKPGLRPID--QAEDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQADDAARFEEGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARN-VPGLFARNERVVAIFETDK-GPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPEALTLEKGAEMGRFKL-GSTVVMLFAKD 261          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_YERE8 (Phosphatidylserine decarboxylase proenzyme OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=psd PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 77/230 (33.48%), Postives = 122/230 (53.04%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI-------------------TFLKNTGD---FVKKGDEFGYFSFGGSTVICVF 618
            I  F  ++K  +N+ + + P    ++TFNEFF+R L+ GARP+  +  E +    AD  +    ++ D      KG  +S++ LL GN + +  F NG  V   LAP+DYHR H+P  G++ + + +PG L++VNP+   +   N+F  N+RV+ I  T  FG +A + +GAT+VGSI                   T+ +   +    ++KG E G F   GSTVI +F
Sbjct:   38 IKAFARYYK--VNMQEAQDPEFSAYRTFNEFFVRPLRAGARPV--VAEENLLAQPADGAISQLGTIHDGQILQAKGHDYSVEALLAGNYMLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTA-ANVPNLFARNERVICIFDTT-FGPMAQILVGATIVGSIETVWAGTITPPREGVIRRWTYPQAGAEGAITLEKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ALISL (Phosphatidylserine decarboxylase proenzyme OS=Aliivibrio salmonicida (strain LFI1238) GN=psd PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 82/218 (37.61%), Postives = 114/218 (52.29%), Query Frame = 1
Query:   34 INLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVF 618
            + +++ K P  E + TFN FF+REL+ GARPI+  + E V    AD+ +  F  + D      KG  +S Q LLG D   +  F+ G      L+P+DYHR H+P    + + V +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI      T    TG  V               KKG+E G F   GSTVI +F
Sbjct:   47 VEMSEAKNPDPEAYSTFNNFFVRELEDGARPIN--DDENVISHPADACVSQFGPITDGQLVQAKGHVYSAQELLGGDAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICFKKGEEMGRFKL-GSTVINLF 259          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_PSEHT (Phosphatidylserine decarboxylase proenzyme OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=psd PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.593e-26
Identity = 76/226 (33.63%), Postives = 116/226 (51.33%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVI 609
            I  F+  +K  +++++ K+P   H+++FNEFF R LK GARPI  +   ++ +   D  +     + D      KG  +S+Q LLG N   +  FL G      LAP+DYHR H+P+ G + + + +PG L++VNP+   +   N+F  N+RVV+I  T   G +A V +GAT+V SI      T     G  V               KKG+E G F  G + V+
Sbjct:   39 IKLFIKQYK--VDMSEAKHPDPAHYESFNEFFTRPLKDGARPI--VADSDIIIHPVDGAISQLGDIVDGQLIQAKGHDYSLQALLGGNKDDTTPFLGGKFATIYLAPKDYHRIHMPIDGTLSKMIYVPGDLFSVNPLTAQN-VPNLFARNERVVAIFET-EIGPLAMVLVGATIVASIETIWAGTVTPPAGSDVFSWNYPTKGENAISLKKGEEMGRFKLGSTVVL 258          
The following BLAST results are available for this feature:
BLAST of FC923196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSD_VIBC38.613e-3039.90Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_PSYIN1.125e-2937.99Phosphatidylserine decarboxylase proenzyme OS=Psyc... [more]
PSD2_CLOAB1.053e-2735.10Phosphatidylserine decarboxylase proenzyme 2 OS=Cl... [more]
PSD_IDILO1.375e-2735.09Phosphatidylserine decarboxylase proenzyme OS=Idio... [more]
PSD_ALTMD1.375e-2736.48Phosphatidylserine decarboxylase proenzyme OS=Alte... [more]
PSD_PHOPR3.063e-2738.94Phosphatidylserine decarboxylase proenzyme OS=Phot... [more]
PSD_SHEAM1.164e-2636.36Phosphatidylserine decarboxylase proenzyme OS=Shew... [more]
PSD_YERE81.520e-2633.48Phosphatidylserine decarboxylase proenzyme OS=Yers... [more]
PSD_ALISL1.986e-2637.61Phosphatidylserine decarboxylase proenzyme OS=Alii... [more]
PSD_PSEHT2.593e-2633.63Phosphatidylserine decarboxylase proenzyme OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionC31702B03EF StrClemenN Citrus clementina cDNA clone C31702B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923196 ID=FC923196; Name=FC923196; organism=Citrus clementina; type=EST; length=627bp
ATCCCAAAGTTTGTAAACTTCTTTAAGGATCAAATCAACTTGGCTGATGT
TAAGTACCCTTTGGAACATTTTAAGACATTTAATGAATTCTTCATTAGAG
AGTTAAAACCGGGTGCAAGACCAATTGATTGCATGGAACGTGAAGAGGTT
GCTGTATGTGCAGCTGATAGTCGTCTGATGGCTTTTAAATCGGTTGAAGA
CAGCCTTAGATTTTGGATCAAGGGTCAAAAGTTTTCAATTCAAGGTCTTT
TGGGAAATGACATATGTTCCAATTCTTTTTTAAATGGAACTATGGTGATT
TTTCGGTTGGCGCCACAGGATTATCATCGTTTTCATCTTCCGGTGTCGGG
AATCATTGAGCAATTTGTGGATATACCTGGATGCCTATACACTGTTAATC
CCATTGCTGTTAATAGCAAATATTGCAATGTTTTTACGGAGAACAAGCGT
GTTGTATCAATTATTTCGACTGCACATTTCGGAAAGGTAGCCTTTGTAGC
AATTGGTGCAACCATGGTTGGTAGCATCACTTTTCTGAAGAACACGGGTG
ACTTTGTCAAAAAAGGAGATGAGTTTGGATATTTCTCATTTGGTGGGAGC
ACAGTAATTTGTGTATTTGAAAAGGAT
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