FC923196

Overview
NameFC923196
Unique NameFC923196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_YERPE (Phosphatidylserine decarboxylase proenzyme OS=Yersinia pestis GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 63/178 (35.39%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI 528
            I  F  ++K  +++ + + P    ++TFNEFF+R L+ G RP+  +  E +    AD  +    ++ +      KG  +S++ LL GN + +  F NG  V   LAP+DYHR H+P  G++ + + +PG L++VNP+   +   N+F  N+RV+ I  TA FG +A + +GAT+VGSI
Sbjct:   38 IKAFARYYK--VDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPV--VAEENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTA-ANVPNLFARNERVICIFDTA-FGPMAQILVGATIVGSI 209
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_YERPB (Phosphatidylserine decarboxylase proenzyme OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 63/178 (35.39%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI 528
            I  F  ++K  +++ + + P    ++TFNEFF+R L+ G RP+  +  E +    AD  +    ++ +      KG  +S++ LL GN + +  F NG  V   LAP+DYHR H+P  G++ + + +PG L++VNP+   +   N+F  N+RV+ I  TA FG +A + +GAT+VGSI
Sbjct:   38 IKAFARYYK--VDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPV--VAEENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTA-ANVPNLFARNERVICIFDTA-FGPMAQILVGATIVGSI 209
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_YERPA (Phosphatidylserine decarboxylase proenzyme OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 63/178 (35.39%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI 528
            I  F  ++K  +++ + + P    ++TFNEFF+R L+ G RP+  +  E +    AD  +    ++ +      KG  +S++ LL GN + +  F NG  V   LAP+DYHR H+P  G++ + + +PG L++VNP+   +   N+F  N+RV+ I  TA FG +A + +GAT+VGSI
Sbjct:   38 IKAFARYYK--VDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPV--VAEENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTA-ANVPNLFARNERVICIFDTA-FGPMAQILVGATIVGSI 209
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_YERP3 (Phosphatidylserine decarboxylase proenzyme OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 63/178 (35.39%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI 528
            I  F  ++K  +++ + + P    ++TFNEFF+R L+ G RP+  +  E +    AD  +    ++ +      KG  +S++ LL GN + +  F NG  V   LAP+DYHR H+P  G++ + + +PG L++VNP+   +   N+F  N+RV+ I  TA FG +A + +GAT+VGSI
Sbjct:   38 IKAFARYYK--VDMKEAQDPEFSAYRTFNEFFVRPLRAGVRPV--VAEENLLAQPADGAISQLGAIREGQILQAKGHNYSLEALLAGNYLLAAEFQNGQFVTTYLAPRDYHRVHMPCDGVLREMIYVPGDLFSVNPLTA-ANVPNLFARNERVICIFDTA-FGPMAQILVGATIVGSI 209
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHISS (Phosphatidylserine decarboxylase proenzyme OS=Shigella sonnei (strain Ss046) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHIFL (Phosphatidylserine decarboxylase proenzyme OS=Shigella flexneri GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHIF8 (Phosphatidylserine decarboxylase proenzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHIDS (Phosphatidylserine decarboxylase proenzyme OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHIBS (Phosphatidylserine decarboxylase proenzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260
[Close]
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_SHIB3 (Phosphatidylserine decarboxylase proenzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260
The following BLAST results are available for this feature:
BLAST of FC923196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSD_YERPE1.681e-2535.39Phosphatidylserine decarboxylase proenzyme OS=Yers... [more]
PSD_YERPB1.681e-2535.39Phosphatidylserine decarboxylase proenzyme OS=Yers... [more]
PSD_YERPA1.681e-2535.39Phosphatidylserine decarboxylase proenzyme OS=Yers... [more]
PSD_YERP31.681e-2535.39Phosphatidylserine decarboxylase proenzyme OS=Yers... [more]
PSD_SHISS1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Shig... [more]
PSD_SHIFL1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Shig... [more]
PSD_SHIF81.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Shig... [more]
PSD_SHIDS1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Shig... [more]
PSD_SHIBS1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Shig... [more]
PSD_SHIB31.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Shig... [more]

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Properties
Property NameValue
Genbank descriptionC31702B03EF StrClemenN Citrus clementina cDNA clone C31702B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923196 ID=FC923196; Name=FC923196; organism=Citrus clementina; type=EST; length=627bp
ATCCCAAAGTTTGTAAACTTCTTTAAGGATCAAATCAACTTGGCTGATGT
TAAGTACCCTTTGGAACATTTTAAGACATTTAATGAATTCTTCATTAGAG
AGTTAAAACCGGGTGCAAGACCAATTGATTGCATGGAACGTGAAGAGGTT
GCTGTATGTGCAGCTGATAGTCGTCTGATGGCTTTTAAATCGGTTGAAGA
CAGCCTTAGATTTTGGATCAAGGGTCAAAAGTTTTCAATTCAAGGTCTTT
TGGGAAATGACATATGTTCCAATTCTTTTTTAAATGGAACTATGGTGATT
TTTCGGTTGGCGCCACAGGATTATCATCGTTTTCATCTTCCGGTGTCGGG
AATCATTGAGCAATTTGTGGATATACCTGGATGCCTATACACTGTTAATC
CCATTGCTGTTAATAGCAAATATTGCAATGTTTTTACGGAGAACAAGCGT
GTTGTATCAATTATTTCGACTGCACATTTCGGAAAGGTAGCCTTTGTAGC
AATTGGTGCAACCATGGTTGGTAGCATCACTTTTCTGAAGAACACGGGTG
ACTTTGTCAAAAAAGGAGATGAGTTTGGATATTTCTCATTTGGTGGGAGC
ACAGTAATTTGTGTATTTGAAAAGGAT
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