FC923196

Overview
NameFC923196
Unique NameFC923196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO8A (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O8 (strain IAI1) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO81 (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O81 (strain ED1a) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO7I (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO5E (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO57 (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O157:H7 GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO27 (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECO24 (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=psd PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDF-VKKGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI  +                     +N G   + KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKL-GSTVINLF 260          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_VARPS (Phosphatidylserine decarboxylase proenzyme OS=Variovorax paradoxus (strain S110) GN=psd PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.195e-25
Identity = 67/205 (32.68%), Postives = 106/205 (51.71%), Query Frame = 1
Query:   61 LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND-ICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL------------------KNTGDFVKKGDEFGYFSFGGSTVICVF 618
            + H+K+FN+FF R LKPG RP+     +   VC  D  +  F ++E    F  KG  +S   L+G D + +  F +G+     L+P+DYHR H+P  G + + + +PG L++VNP+        +F  N+RVV +  +AH G    V +GAT+VGS+  +                   +    +K+G+E G F   GSTV+ +F
Sbjct:   57 INHYKSFNQFFTRALKPGVRPL----AQADLVCPVDGAISQFGAIEGDQIFQAKGHNYSTTALVGGDAVLAARFAHGSFATLYLSPKDYHRIHMPCDGRLVRMIHVPGDLFSVNPVTARG-VPGLFARNERVVCVFESAH-GPFVLVLVGATIVGSMATVWHGVVNPPRGGELREWHYADQQILLKQGEEMGRFLL-GSTVVMLF 254          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ANOFW (Phosphatidylserine decarboxylase proenzyme OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=psd PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.195e-25
Identity = 67/199 (33.67%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   31 QINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD 627
            +IN  +++  L  ++T  + F+R LK G RPID     +  V   D+ +     + D     +KG+ +SI+ +LG+D  +  +L+GT +I  L+P  YHR H P+ G + +  ++ G  Y VN + +      +    +R+  + +   +   A V +GA  V SI  L +  D VKKG+E GYFSF GSTV+ +FEKD
Sbjct:   43 KINKEEMEKKLHEYETLQQLFVRTLKKGLRPIDT--HPDSVVSPVDAVIEDVGIITDQKEIIVKGKTYSIREMLGDDQIAEKYLHGTFIILYLSPSHYHRIHSPICGEVVKQWELGGKSYPVNRLGLKYGKAPLSKNYRRITELYTNGMY--TAIVKVGAMFVNSIE-LTHEHDHVKKGEEIGYFSF-GSTVVLLFEKD 235          
BLAST of FC923196 vs. ExPASy Swiss-Prot
Match: PSD_ECOUT (Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=psd PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 79/229 (34.50%), Postives = 117/229 (51.09%), Query Frame = 1
Query:    1 IPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLL-GNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFVK----------------KGDEFGYFSFGGSTVICVF 618
            I  FV ++K  +  A  K     ++TFNEFF+R L+   RPID      V V  AD  +     +E+      KG  +S++ LL GN + ++ F NGT V   L+P+DYHR H+P +GI+ + + +PG L++VN +   +   N+F  N+RV+ +  T  FG +A + +GAT+VGSI      T        +K                KG E G F   GSTVI +F
Sbjct:   38 IDLFVKYYKVDMKEAQ-KPDTASYRTFNEFFVRPLRDEVRPIDT--DPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQN-VPNLFARNERVICLFDT-EFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDDSVALLKGQEMGRFKL-GSTVINLF 260          
The following BLAST results are available for this feature:
BLAST of FC923196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSD_ECO8A1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_ECO811.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_ECO7I1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_ECO5E1.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_ECO571.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_ECO271.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_ECO241.681e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]
PSD_VARPS2.195e-2532.68Phosphatidylserine decarboxylase proenzyme OS=Vari... [more]
PSD_ANOFW2.195e-2533.67Phosphatidylserine decarboxylase proenzyme OS=Anox... [more]
PSD_ECOUT3.745e-2534.50Phosphatidylserine decarboxylase proenzyme OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC31702B03EF StrClemenN Citrus clementina cDNA clone C31702B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923196 ID=FC923196; Name=FC923196; organism=Citrus clementina; type=EST; length=627bp
ATCCCAAAGTTTGTAAACTTCTTTAAGGATCAAATCAACTTGGCTGATGT
TAAGTACCCTTTGGAACATTTTAAGACATTTAATGAATTCTTCATTAGAG
AGTTAAAACCGGGTGCAAGACCAATTGATTGCATGGAACGTGAAGAGGTT
GCTGTATGTGCAGCTGATAGTCGTCTGATGGCTTTTAAATCGGTTGAAGA
CAGCCTTAGATTTTGGATCAAGGGTCAAAAGTTTTCAATTCAAGGTCTTT
TGGGAAATGACATATGTTCCAATTCTTTTTTAAATGGAACTATGGTGATT
TTTCGGTTGGCGCCACAGGATTATCATCGTTTTCATCTTCCGGTGTCGGG
AATCATTGAGCAATTTGTGGATATACCTGGATGCCTATACACTGTTAATC
CCATTGCTGTTAATAGCAAATATTGCAATGTTTTTACGGAGAACAAGCGT
GTTGTATCAATTATTTCGACTGCACATTTCGGAAAGGTAGCCTTTGTAGC
AATTGGTGCAACCATGGTTGGTAGCATCACTTTTCTGAAGAACACGGGTG
ACTTTGTCAAAAAAGGAGATGAGTTTGGATATTTCTCATTTGGTGGGAGC
ACAGTAATTTGTGTATTTGAAAAGGAT
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