FC923203

Overview
NameFC923203
Unique NameFC923203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E2_SCHPO (Eukaryotic translation initiation factor 4E-2 OS=Schizosaccharomyces pombe GN=tif452 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 3
Query:  246 HPLKNKFVFWYTRR-TPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSG--RFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWKPHASD 650
            HPL++++  W+ +  T G+     + D +K+I+ F TVE FW  +  +++ S+LP+ +D   F +GIRP WED  N NGGKW  + K   S     W  +VLA +G+ LD  G  + G V ++R     ++VW  + +D
Sbjct:   64 HPLQHEWTLWFLKPPTQGLE----WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCND 198          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E5_CAEEL (Eukaryotic translation initiation factor 4E-5 OS=Caenorhabditis elegans GN=ife-5 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  228 ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQLDYG-DNICGAVLSIRFNEDILSVWKPHASDHQAVMAL 671
            EL   ++PL+  + +W+           S++D +KK+  F+TV  FW  Y  +  PS L    D ++F++ I+P WE   N +GG+W+I   K     V    W +++LAL+G+Q     ++ICG V ++R     +SVW  + +D    M +
Sbjct:    3 ELTTPIYPLQRNWSWWFLNDD----RNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRI 151          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E1_SCHPO (Eukaryotic translation initiation factor 4E-1 OS=Schizosaccharomyces pombe GN=tif451 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 52/172 (30.23%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  189 DNNNKDAEERQAR-----ELKANL-HPLKNKFVFWYTRR-TPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFK---KVVSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWKPHASDHQAVMAL 671
            +N   + +E+  R     ++  NL HPL   +  W+    TPG+     + +  K I+ F++VE FW  + ++   S LP  +D   F+EG+RP WED  N  GGKW  + K          W   VLA +G+ LD  G  + G V+++R     L+VW    ++ + +M +
Sbjct:   13 ENTVSEPQEKALRTVFDDKINFNLKHPLARPWTLWFLMPPTPGLE----WNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEI 180          
The following BLAST results are available for this feature:
BLAST of FC923203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E2_SCHPO1.343e-1735.25Eukaryotic translation initiation factor 4E-2 OS=S... [more]
IF4E5_CAEEL1.485e-1630.72Eukaryotic translation initiation factor 4E-5 OS=C... [more]
IF4E1_SCHPO1.390e-1430.23Eukaryotic translation initiation factor 4E-1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC31702B10EF StrClemenN Citrus clementina cDNA clone C31702B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923203 ID=FC923203; Name=FC923203; organism=Citrus clementina; type=EST; length=743bp
GAGCACACGAATTTCAATAATCCCTCCTCTGTTCACTCTTCGCTTCCTTG
TTTGGTTAAAAGTGAGAAAATTAGGGCTAGAGGTGAAGAAGAACAAAATT
TTAAAAAGAAAAAGAAAATCAATAAATGGAAATAACAGATAAGAAGGAAT
CCGATATCAATAACACACAAACAGTCGCCGATTCCGTCGATAACAATAAC
AAAGACGCCGAAGAACGCCAAGCTCGTGAACTTAAAGCCAATTTGCATCC
TCTTAAGAACAAGTTTGTCTTTTGGTACACTCGTCGAACACCTGGAGTTC
GAACTCAAACATCCTATGAGGACAACATAAAGAAAATTGTGGACTTCAGT
ACTGTTGAAGGCTTTTGGGTCTGCTATTGCCACTTGGCTCGTCCTTCTTT
GTTACCAAGCCCTACAGATTTGCATCTTTTCAAGGAAGGAATTCGCCCAT
TATGGGAGGACTCTGCAAATTGCAATGGCGGTAAATGGATAATAAGGTTC
AAGAAAGTTGTATCAGGTCGCTTTTGGGAAGATCTGGTTCTTGCCTTGGT
GGGTGACCAGCTTGACTATGGTGATAACATATGTGGTGCAGTCCTAAGCA
TTCGATTCAATGAAGATATATTGAGTGTGTGGAAACCGCATGCATCTGAT
CATCAGGCTGTGATGGCTCTTAGAGATTCTATCAACGGCACTTAAGCTGC
CCACAGCTATGTTATGGAATACAGCCCATGATGCTCTCTGCGC
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