FC923205

Overview
NameFC923205
Unique NameFC923205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.796e-47
Identity = 90/200 (45.00%), Postives = 124/200 (62.00%), Query Frame = 3
Query:   69 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPL 668
            + Q+P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRL+TNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L+G +            FL  +L  M+VYVWS+++P + ++F GL TF A +LPW L+GFS+ +G S  VDLLG+  GH YYFLEDV+P   G + L
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF-----------FLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRL 198          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.521e-46
Identity = 92/201 (45.77%), Postives = 128/201 (63.68%), Query Frame = 3
Query:   72 KQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYP-RMTGRRPLK 671
            ++MP +TR Y  A ++ T    L+ ++PF+L  +  L+++ YQFWRLIT+F FF               RYC +LEE SFRGR ADF+YM LFGA  +            LS  F +I+FL  + T+M+VY+WS++NP I M+F G+ TFTA YLPWVLL FS+ +G +A VD +G+  GH Y+FLEDV+P +  G+R LK
Sbjct:    9 EEMPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMI-----------LSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLK 198          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.868e-45
Identity = 86/200 (43.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   69 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPL 668
            + Q+P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRLIT FLFF               RYC++LEE SFRGR ADF++M LFG   +T    +G +            FL  +L  M+VYVWS+++P + ++F GL  F A +LPW L+GFS+ +G S   DLLG++ GH YYFLEDV+P   G + L
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSLF-----------FLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRL 198          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 81/203 (39.90%), Postives = 114/203 (56.16%), Query Frame = 3
Query:   63 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLK 671
            ++Y  +P IT+ Y T    TTV   L +++P ++ L P LV+K +Q WRLITN  F               ARY   LE+  F  RTADFL+M++FG+     T+L+  +IP+    F     L  SL  M++Y+WS++ P  ++S  GL T  A YLPW +L   V  G+    DLLG+IAGH YYFL  ++P  TG+  LK
Sbjct:    6 EFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSF----TLLVLSVIPFFWTPF-----LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLK 199          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 77/203 (37.93%), Postives = 109/203 (53.69%), Query Frame = 3
Query:   63 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLK 671
            ++Y  +P I++ Y T     TV C L I++P  L L+   V K +Q WRL T+F F  K            ARY   LE+ +F  RTADFL+M++FGA     ++L    IP+L      I FL   +  M++YVWS++ P   +S  GL    + YLPW +LG  V  G+     LLG++ GH YYFL  ++P  TG+  LK
Sbjct:    6 EYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAI----SLLALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLK 199          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 3
Query:   63 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLK 671
            ++YK +P I++ Y T    TTV   L I+ P  L L   LV K ++ WRL+T+F F               ARY  +LE+ +F  RTADFL+M++FGA     ++L+  +IP L  SF    FL   +  M++YVWS++NP   ++  GL    + YLPW +L   V  G+S    LLG++ GH YYF   ++P  TG+  LK
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSIIP-LFNSF----FLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLK 199          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 72/203 (35.47%), Postives = 110/203 (54.19%), Query Frame = 3
Query:   63 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLK 671
            ++YK +P I++ Y T    TTV   L I++P  L L+   V K ++ WR+ T+F F               ARY  +LE+ +F  RTADFL+M++FGA     ++L+  +IP L+        L   +  M+VYVWS++NP   ++  G+    A YLPWV+L   V  G+     LLG++ GH YY+   ++P  TG+  LK
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSVIPQLN-----TYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLK 199          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_HUMAN (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 67/205 (32.68%), Postives = 97/205 (47.32%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXA---RYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRR 662
            + DW++ +P ITR +  A +   +   L +ISP  L L P   +  +Q WR IT   +F                  +Y   LE  +F GR AD+L+MLLF    +  T L   M             L   L + ++YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP   G R
Sbjct:    4 IGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ-----------LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGR 197          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_PONAB (Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 67/205 (32.68%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXA---RYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRR 662
            + DW++ +P ITR +  A +   +   L +ISP  L L P   +  +Q WR IT   +F                   Y   LE  +F GR AD+L+MLLF    +  T L   M             L   L + ++YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP   G R
Sbjct:    4 IGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPGTGFLYLVNLYFLYHYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ-----------LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGR 197          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_BOVIN (Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 66/205 (32.20%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXA---RYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRR 662
            + DW++ +P ITR +  A +   +   L +ISP    L P   +  +Q WR IT   +F                  +Y   LE  +F GR AD+L+MLLF    +  T L   M             L   L + ++YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP   G R
Sbjct:    4 IGDWFRSIPTITRYWFAATVAVPLVGKLGLISPAYFFLWPEAFLYRFQIWRPITATFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ-----------LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGR 197          
The following BLAST results are available for this feature:
BLAST of FC923205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DERL3_HUMAN1.796e-4745.00Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL2_CAEEL1.521e-4645.77Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DERL3_MOUSE2.868e-4543.00Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL1_ARATH9.248e-3639.90Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ9.570e-3337.93Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE3.079e-3137.93Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE9.903e-3035.47Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL1_HUMAN5.819e-2232.68Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1[more]
DERL1_PONAB7.600e-2232.68Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1[more]
DERL1_BOVIN1.693e-2132.20Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31702B12EF StrClemenN Citrus clementina cDNA clone C31702B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923205 ID=FC923205; Name=FC923205; organism=Citrus clementina; type=EST; length=679bp
AGAGATAGATAGATAAACCATATAGTCAAAAAAATTAAAAGAAAATGGCT
CAGGCTGTTGAAGATTGGTACAAACAGATGCCTATCATCACCCGCACGTA
TCTCACAGCCGCTATCGTCACCACCGTCGGCTGCTCTCTCGATATAATAT
CTCCTTTTAATCTGTGCTTGCACCCAACGTTAGTGGTTAAGCATTATCAG
TTTTGGCGCCTTATCACCAATTTTCTCTTCTTCCGGAAAATGGATTTAGA
TTTTTTGTTCCATATGTTTTTTCTCGCACGATACTGCAAGCTTCTTGAAG
AGAATTCCTTCAGGGGAAGGACTGCAGATTTCTTGTACATGCTTTTATTT
GGAGCCACTTTTCTAACTGGCACTGTTCTTATTGGGGGGATGATACCTTA
CTTGTCAGAATCATTTGCAAAAATCATTTTCCTTAGCAATTCATTGACAC
TCATGATGGTTTATGTATGGAGCAAACAAAATCCTTTCATCCACATGAGT
TTTTTGGGCCTTTTTACATTTACAGCAGCTTACTTACCATGGGTGCTCTT
GGGATTCTCAGTCTTCGTTGGCGCTAGCGCTTGGGTGGATTTGCTGGGGA
TGATAGCCGGTCATGCCTACTATTTTCTCGAAGATGTTTATCCTAGGATG
ACAGGTCGCCGGCCCTTAAAACACCATCT
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