FC923205

Overview
NameFC923205
Unique NameFC923205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_MOUSE (Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXA---RYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRR 662
            + DW++ +P ITR +  A +   +   L IISP    L P   +  +Q WR  T   +F                  +Y   LE  +F GR AD+L+MLLF    +  T L   M             L   L + ++YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP   G R
Sbjct:    4 IGDWFRSIPAITRYWFAATVAVPLIGKLGIISPAYFFLWPEAFLYRFQIWRPFTATFYFPVGPGTGFLYLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQ-----------LLMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGR 197          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 64/204 (31.37%), Postives = 95/204 (46.57%), Query Frame = 3
Query:   66 WYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF---RKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPL 668
            WY+ +P  TR +LTA +V ++ C  D+I    L L  + V    Q WR +T+   F                  +Y   LE++ +    AD+LY+L+  A        IGGMI         + FL ++L L + Y+W + N  + +SF     F A YLPWVL  F  F+   +   L+G+  GH YYF +  Y +  G  PL
Sbjct:    6 WYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLAN----IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFE-FIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPL 197          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 59/199 (29.65%), Postives = 98/199 (49.25%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFR---KXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYP 644
            +E++   +PI+TR +  A+ +  +      I+   + L   LVV  +QFWR +T  +++    +              Y K LE  ++RGR+AD+L+ML+F   F +G  +              I FL   + + ++YVW + N    +SF     F A YLPWVL GF+  +      +L+G++ GHAY+F+   YP
Sbjct:    3 LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYPVTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMA-----------LDIYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYP 190          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: DERL1_DICDI (Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 53/201 (26.37%), Postives = 95/201 (47.26%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWV-LLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTG 656
            V++W+  +P ++R      +   V  ++ +IS   L L  T   KH+  WRLIT                    +Y   LE  ++ G++ D+L+ ++F +      ++ G +  Y         FL     + ++Y++S+ NP    +F G F+F   YLPWV L+   +  G   + D L +++GH +++L D+YPR  G
Sbjct:    4 VKEWFNSIPPVSRYMFAIFLGIPVLAAMHLISFNYLYLDFTFTFKHFHLWRLITAPCIISSLGPMFLFNLIFFYQYTTRLESLNYAGKSDDYLFCIIFISIC---NIIFGLIFEYY--------FLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANG 193          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: YGR8_SCHPO (Uncharacterized derlin-like protein C365.08c OS=Schizosaccharomyces pombe GN=SPBC365.08c PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 56/203 (27.59%), Postives = 88/203 (43.35%), Query Frame = 3
Query:   57 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLL--GMIAGHAYYFLEDVYPRMTGR 659
            +++   ++P +TR  L     TT+     ++SP  L LH  LVV+  Q++RL TN+L +               +Y   LE   F      ++  L+  A  +    LI G+   L++S A  I           Y WS  N F  + FL  F     YLP+VLLGFS   G    + +L  G+I+     F + ++  +  R
Sbjct:    9 IQELLSRIPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRLFTNYL-YAGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLGSALNQSLAAAI----------AYNWSLFNSFSKIQFLFGFHVQGKYLPYVLLGFSFLTGGLPSLVVLGFGIISAMIVNFFDSIHTPVVHR 200          
BLAST of FC923205 vs. ExPASy Swiss-Prot
Match: YFFH_SCHPO (Uncharacterized derlin-like protein C1687.17c OS=Schizosaccharomyces pombe GN=SPAC1687.17c PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 42/146 (28.77%), Postives = 69/146 (47.26%), Query Frame = 3
Query:  201 FWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFS-VFVGASAWVDLLGMIAGHAYYFLED 635
            +WR IT FL+                R+  +LE +S   +T  FL            TVLI      ++  F+ + F ++  +  M+Y+WS ++P   +S LGLF   A Y+PWV++    +  G    +DL+  + GH Y+F+ D
Sbjct:   30 YWRAITTFLYVGPFGLELILYLSFLLRFMSMLERSSPPPQTQSFLK-----------TVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLLDLISALIGHVYFFVTD 164          
The following BLAST results are available for this feature:
BLAST of FC923205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DERL1_MOUSE2.888e-2132.20Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1[more]
DERL1_DROME4.926e-2131.37Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=... [more]
DERL1_CAEEL7.114e-2029.65Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 S... [more]
DERL1_DICDI1.342e-1826.37Probable derlin-1 homolog OS=Dictyostelium discoid... [more]
YGR8_SCHPO9.312e-1227.59Uncharacterized derlin-like protein C365.08c OS=Sc... [more]
YFFH_SCHPO2.709e-1128.77Uncharacterized derlin-like protein C1687.17c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC31702B12EF StrClemenN Citrus clementina cDNA clone C31702B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923205 ID=FC923205; Name=FC923205; organism=Citrus clementina; type=EST; length=679bp
AGAGATAGATAGATAAACCATATAGTCAAAAAAATTAAAAGAAAATGGCT
CAGGCTGTTGAAGATTGGTACAAACAGATGCCTATCATCACCCGCACGTA
TCTCACAGCCGCTATCGTCACCACCGTCGGCTGCTCTCTCGATATAATAT
CTCCTTTTAATCTGTGCTTGCACCCAACGTTAGTGGTTAAGCATTATCAG
TTTTGGCGCCTTATCACCAATTTTCTCTTCTTCCGGAAAATGGATTTAGA
TTTTTTGTTCCATATGTTTTTTCTCGCACGATACTGCAAGCTTCTTGAAG
AGAATTCCTTCAGGGGAAGGACTGCAGATTTCTTGTACATGCTTTTATTT
GGAGCCACTTTTCTAACTGGCACTGTTCTTATTGGGGGGATGATACCTTA
CTTGTCAGAATCATTTGCAAAAATCATTTTCCTTAGCAATTCATTGACAC
TCATGATGGTTTATGTATGGAGCAAACAAAATCCTTTCATCCACATGAGT
TTTTTGGGCCTTTTTACATTTACAGCAGCTTACTTACCATGGGTGCTCTT
GGGATTCTCAGTCTTCGTTGGCGCTAGCGCTTGGGTGGATTTGCTGGGGA
TGATAGCCGGTCATGCCTACTATTTTCTCGAAGATGTTTATCCTAGGATG
ACAGGTCGCCGGCCCTTAAAACACCATCT
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