FC923244

Overview
NameFC923244
Unique NameFC923244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA6_MOUSE (GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 550
            ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F      E   K+I  C  +A  G HAVL           E++A    LQ +FG  I  Y I+VF
Sbjct:  106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFSPQNQPEATAKKI--CDLLASPGPHAVL-LVIQVGRYTAEDQAVARCLQEIFGNTILAYTILVF 224          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA8_MOUSE (GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE----FVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP  F  + G+E     + +EI  C+ + ++G+  +           QE+E  +  L+  F + I  YMIV+F               Y      K LK+IL+ C+ R   F+N+
Sbjct:  478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FIQTPGTEKDPSRLKEEIHHCLSLCEEGM-KIFVLVLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLF--TRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNK 641          

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQ-LCDNRCVLFDNRLXMRPRE 697
            ++L+G+ G GKSATGN+ILG+  F+S+ S   VT  C+ +   ++  QV+ VIDTP LF   + SE   + + +C+ +  D  H VL          +E+   +  +    G K + +MIVVF                   E  + LKE+++ +   RC  F+N+   + RE
Sbjct:   51 LLLLGKQGAGKSATGNTILGKAVFESKFSDHMVTDRCQSESVSVRGKQVI-VIDTPDLFSSLSCSEVRQQNLKQCLELLADD-HCVLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYI----ESKESLKELIKNIGSRRCCTFNNKADKKQRE 217          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA6_RAT (GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 59/165 (35.76%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            ++LVG+TG+GKSATGNSILGR+ F+S+ S+  VT   +     L +G+ + VIDTP +       E   K+I  C  +A  G HAVL          +++EAA   LQ +FG  I  Y I+VF               Y+     K L  +   C+ R   F+NR
Sbjct:  105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILSPQNQPEATAKKI--CDILASPGPHAVLLVIQVGRYTTEDQEAA-RCLQEIFGNGILAYTILVF--TRKEELAEGSLEEYIKENNNKTLDALDVACERRHCGFNNR 263          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA8_RAT (GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 52/173 (30.06%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQ-LCDNRCVLFDNRLXMRPRE 697
            ++L+G+ G GKSATGN+ILG+  F+SR S   VT  C+ +   ++  QV+ VIDTP LF      E   + + +C+ +  D    VL          +E++  +  +Q +FG + + +MIVVF                   E  K LK++++ +   RC  F+N+   + +E
Sbjct:   51 LLLLGKQGAGKSATGNTILGKAVFESRFSHHMVTKRCQSESVSVRGKQVI-VIDTPDLFSSLGCPEVQQQNLRQCLDLLADPY--VLLLVTPIGHSTEEDKKTIEGIQGVFGPQAYRHMIVVFTREDELGEDTLQNHI----ESKKYLKKLIENIGSQRCCAFNNKADKKQQE 216          

HSP 2 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 58/169 (34.32%), Postives = 82/169 (48.52%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE----FVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS  +  R  L D Q + V+DTP L   S G+E     + KEI +C+    +    V           QE+EA +  L+  F + I  YMIV+F               +      K LK I + C  R   F+N+
Sbjct:  477 IILLGRSGVGKSATGNTILGRPAFVSQLRAQPVTSRSQSGRRTL-DWQDIVVVDTPSLNQMS-GTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASFEENIMKYMIVLF--TRKEDLGDGDLYDFTNNTKNKVLKRIFKKCKGRVCAFNNK 641          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA1_MOUSE (GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 55/173 (31.79%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNRLXMRPRE 697
            ++LVGRTG GKSATGNSILG++ F SR  +  VT +C +   +   G  V V+DTP +F         G  E  +C  ++  G HA+L          Q+ + AL +++ LFGK++    +VVF               Y+     + L++++  C  R    +NR     RE
Sbjct:    6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWA-GWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQ-ALAAVKRLFGKQVMARTVVVF--TRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSERE 174          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA5_MOUSE (GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 52/165 (31.52%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            ++LVG++G GKSATGNSIL R AF+SR     VT T + + T   +G+ + V+DTP +F+  A ++ + K+I  C  +   G H VL           E+  A+  ++ +FG  +  +MIV+F               ++     + L+ + Q C  R   F+NR
Sbjct:   29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAE-TGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPH-VLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMIVLF--TRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNR 189          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA3_MOUSE (GTPase IMAP family member 3 OS=Mus musculus GN=Gimap3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 51/165 (30.91%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            ++LVG++G GKSATGNS+L R AF+SR     VT T + + T   +G+ + V+DTP +F+  A ++ + K+I  C  +   G H VL           E+  A+  ++ +FG  +  +MIV+F               ++     + L+ ++Q C  R   F+NR
Sbjct:   25 ILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAE-TGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPH-VLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLF--TRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRRYCAFNNR 185          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA5_RAT (GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  167 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 550
            +G   ++LVG++G GKSATGNSIL R AF+SR     VT T + +     +G+   V+DTP +F+    ++ + K+I  C  M   G H VL           E+  A+  ++ +FG  +  YMIV+F
Sbjct:   42 SGLLRILLVGKSGCGKSATGNSILRRPAFESRLRGQSVTRTSQAEMGTW-EGRSFLVVDTPPIFESKIQNQDMDKDIGNCYLMCAPGPH-VLLLVTQLGRYTVEDAMAVRMVKQIFGVGVMRYMIVLF 167          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA6_HUMAN (GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 550
            ++L+G+TG+GKSATGNSILGR  F+S+ S+  VT T + +R+    G+ + VIDTP +       E V   I + I ++  G HAVL           E++  +  LQ +FG  +  + I+VF
Sbjct:   43 LILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQ-RRSREWAGKELEVIDTPNILSPQVSPE-VADAICQAIVLSAPGPHAVL-LVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVF 162          
The following BLAST results are available for this feature:
BLAST of FC923244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GIMA6_MOUSE3.286e-1543.09GTPase IMAP family member 6 OS=Mus musculus GN=Gim... [more]
GIMA8_MOUSE9.561e-1533.73GTPase IMAP family member 8 OS=Mus musculus GN=Gim... [more]
GIMA6_RAT1.631e-1435.76GTPase IMAP family member 6 OS=Rattus norvegicus G... [more]
GIMA8_RAT8.094e-1430.06GTPase IMAP family member 8 OS=Rattus norvegicus G... [more]
GIMA1_MOUSE8.094e-1431.79GTPase IMAP family member 1 OS=Mus musculus GN=Gim... [more]
GIMA5_MOUSE1.057e-1331.52GTPase IMAP family member 5 OS=Mus musculus GN=Gim... [more]
GIMA3_MOUSE1.381e-1330.91GTPase IMAP family member 3 OS=Mus musculus GN=Gim... [more]
GIMA5_RAT1.169e-1235.94GTPase IMAP family member 5 OS=Rattus norvegicus G... [more]
GIMA6_HUMAN4.441e-1237.40GTPase IMAP family member 6 OS=Homo sapiens GN=GIM... [more]

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Properties
Property NameValue
Genbank descriptionC31702F03EF StrClemenN Citrus clementina cDNA clone C31702F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923244 ID=FC923244; Name=FC923244; organism=Citrus clementina; type=EST; length=699bp
GATACAAAACACTTCCAAAAAAGTCAAGTCTCTTTCCCTTTCTCATCTCT
TCATACCCAGGCCAACGCAATCCCTTTTGCTCTCCTGTCTTCGCAAGTAA
ATTGGAACTTTTTATATGATGGGAGGAAGTGCGATTGATGATGATTGGGA
GCTTACTTCTCCATCTAATGGGGAGCGCACTGTGGTTTTAGTTGGCCGTA
CTGGCAATGGCAAAAGTGCGACGGGCAACAGTATTCTTGGAAGAAGAGCC
TTCAAGTCAAGGGCTAGTTCATCTGGTGTTACTAGTACCTGTGAAATGCA
GAGAACCGTGCTCAAAGATGGCCAAGTTGTTAATGTCATTGATACCCCTG
GACTTTTTGATTTTTCCGCTGGCTCTGAGTTTGTTGGCAAGGAAATTGTC
AAATGTATCGGTATGGCCAAGGATGGGATCCATGCAGTCCTTGTAGTTTT
CTCTGTTAGAAGCCGTTTTTCTCAAGAGGAAGAAGCTGCACTACACAGTT
TGCAGACCTTGTTCGGGAAAAAAATTTTTGACTATATGATTGTTGTTTTC
ACTGGAGGGGATGAACTTGAAGATAATGATGAAACGTTAGAAGATTATTT
GGGTCGTGAGTGTCCAAAGCCTTTAAAGGAAATCCTTCAACTATGTGATA
ATAGGTGCGTGCTTTTTGATAACAGACTAANGATGAGGCCAAGAGAACT
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