FC923251

Overview
NameFC923251
Unique NameFC923251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.265e-54
Identity = 102/163 (62.58%), Postives = 130/163 (79.75%), Query Frame = 1
Query:  214 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            K+    +K   GTTTLAF ++ G++V  DSRAS G  I+SQ+VKK+IEINPY+LGT+AGGAADCQFW   LG++CRLH+L NK  ISV+ ASK+L+NI YSY+G GLS+GTM+AG  + G  LYY+DS+G RLKG  FSVGSGS +AYGVLDSGY++D+S +E
Sbjct:   50 KNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQE 212          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.071e-53
Identity = 101/163 (61.96%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  214 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            ++ K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S EE
Sbjct:   61 QERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEE 223          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.399e-53
Identity = 100/158 (63.29%), Postives = 128/158 (81.01%), Query Frame = 1
Query:  232 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            +K A GTTTLAF F+ G++VA DSRA+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW   LG +CRLHEL  K RISV  ASK+L+N++Y Y+G GLS+GTMI G+  + GP +YYVDS+G RLKG  F VGSG  +AYGVLDS YK+D+S+E+
Sbjct:   70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVED 227          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 100/162 (61.73%), Postives = 126/162 (77.78%), Query Frame = 1
Query:  217 DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            ++K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADC +W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ +AYGV+DSGY+ D+SIEE
Sbjct:   62 ESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEE 223          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.117e-53
Identity = 100/163 (61.35%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  214 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            ++    ++ A GTTTLAF F+ GV+VA DSRA+ G YISS  + K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S EE
Sbjct:   61 QERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEE 223          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.639e-52
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 1
Query:  232 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            ++ A GTTTLAF F+ GV+ A DSRAS G YIS+  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ ++S EE
Sbjct:   67 IEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEE 223          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.878e-52
Identity = 101/164 (61.59%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  211 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            +K+ +  + H  GTTTLAF F+ GV+VA DSRA+ G YISS  V K+IEINP +LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++Y YRGM LS+G+MI GWD+ GPGLYYVD  G RL G  FS GSGS YAYGV+DSGY+  +S EE
Sbjct:   62 EKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEE 223          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 80/154 (51.95%), Postives = 110/154 (71.43%), Query Frame = 1
Query:  241 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            A GTTTLAF F+ GV+ AAD+R+S G Y++  +  K+I ++ ++LGT +G +ADC  W+R L  + RL EL   +  SV  A+KLL+ ++  YRG+ L V T + GWD +GP L+YV S+G RL+G  FSVGSGSPYAYGVLD GY++DMS +E
Sbjct:   47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQE 200          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 80/154 (51.95%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  241 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            A GTTTLAF F+ GV+ AAD+R+S G Y++  + +K+I ++  +LGT +G +ADC  W+R L  + RL EL   +  SV G +KLLA ++  YRG+ L V T + GWD +GP L+YV S+G  L+G  FSVGSGSPYAYGVLD GY +DM+I+E
Sbjct:   47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQE 200          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB8_PIG (Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  439 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            RL+ L N  RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSG+++D+SIEE
Sbjct:    1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEE 88          
The following BLAST results are available for this feature:
BLAST of FC923251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSB5_SCHPO1.265e-5462.58Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]
PSB8_RAT1.071e-5361.96Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB5_YEAST1.399e-5363.29Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB8_BOVIN2.387e-5361.73Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB8_MOUSE3.117e-5361.35Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB8_HUMAN2.639e-5263.06Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB8_CANFA5.878e-5261.59Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB11_HUMAN5.162e-4051.95Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB11_MOUSE8.804e-4051.95Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB8_PIG3.470e-2864.77Proteasome subunit beta type-8 (Fragment) OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionC31702F10EF StrClemenN Citrus clementina cDNA clone C31702F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923251 ID=FC923251; Name=FC923251; organism=Citrus clementina; type=EST; length=705bp
GATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCTTAGCTA
CATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCGACACTA
GCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAGCTCTGT
CCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTACTGATTT
TGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGGGGA
CAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCTGAT
TCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAAGAAAAT
TATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAGCCG
ATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACATGAA
TTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCTGGC
CAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTATGA
TTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGTGAA
GGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATA
TGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAG
AGCTG
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