FC923251

Overview
NameFC923251
Unique NameFC923251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  244 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            KGTTT+    K+GV+ A + RASMG  I+ ++  KI +I+ ++  T+AG  AD Q   + L  +  L+ + N  +IS+  A+ L ANIL+S R     V T++ G DE G  +Y +D  GG +     S GSGSP AYGVL+  Y  ++ ++E
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDE 160          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 56/157 (35.67%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  235 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIEE 702
            K+ KGTTT+  +  +G+++A++ RA+MG +I+S++ KK+ +I+  +  T AG   D Q   R + ++ +L+++     +++ G + L++N L   R   + V  +I G D+ GPG+Y +D+ GG ++ TR S  GSGSP AYGVL+  Y+ +M+++E
Sbjct:    5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKE 161          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  244 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEE 702
            KGTTT+  + K+GV++A + RA+MG +I+S++ KKI +I   M  T AG   D QF  R + I+  L+E+  +R+ +V   + L +N+L SYR     V  +I G D  G  +Y +D  GG ++     + GSGS  AYGVL+  +  ++ ++E
Sbjct:   10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDE 163          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 60/155 (38.71%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  244 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIEE 702
            KGTTT+  I  + V++A D RAS+G  ++ +  KK+ +I+ Y+  T+AG   D Q   R L  + +L+++   R I     + LL+NIL+S R        +I G+D   G  L+ +D  GG  +   F + GSGSP AYGVL++GY  DMS+EE
Sbjct:    5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEE 159          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 56/153 (36.60%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  244 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            KGTTT+  + K+GV++AAD RAS+G  I +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLANI+   +        ++ G+DE  P LY VD  GG  +    + GSG  +AY +LDS YK ++++EE
Sbjct:    9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEE 160          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  244 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            KGTTT+  +  +GV++AAD RAS+G  + +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLAN+L   R +      ++ G+DE  P LY VD  GG  +    + GSG  +AY VLDS Y+ D+ + E
Sbjct:    9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVRE 160          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMSIEE 702
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++G SGS Y YG  D+ YK DMS EE
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE-LQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEE 168          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMSIEE 702
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++G SGS Y YG  D+ YK DMS EE
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE-LQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEE 168          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 49/152 (32.24%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            GTTT+    K+ V++A + R +M  +I  ++ KK+ +I+ Y   T+AG   D Q   R +  +  L+ L  +  + +   + LL+N+L   + M   V  ++ G D T P ++ +D+ GG ++    S GSGSP+ YGVL+S Y   M+++E
Sbjct:    8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDE 158          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  244 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            KGTTT+  + KEGV++AAD+RAS+G  I +++V KI +I+ ++    AG   D     R L  +  L++    + +SV   + LLANIL   +        ++ G+DE  P L+ VD  GG  +    + GSG  +AY +LDS Y+ +MS+ +
Sbjct:    9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEK-PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVND 160          
The following BLAST results are available for this feature:
BLAST of FC923251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSMB_METTH6.125e-2539.22Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_METTE1.045e-2435.67Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_ARCFU4.854e-2237.01Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA4.109e-2138.71Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_PYRHO6.560e-1936.60Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRAB1.461e-1835.95Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PB6LB_SALSA4.252e-1838.06Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA4.252e-1838.06Proteasome subunit beta type-6-A like protein OS=S... [more]
PSMB_THEAC7.253e-1832.24Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSMB_PYRFU7.253e-1835.95Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31702F10EF StrClemenN Citrus clementina cDNA clone C31702F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923251 ID=FC923251; Name=FC923251; organism=Citrus clementina; type=EST; length=705bp
GATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCTTAGCTA
CATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCGACACTA
GCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAGCTCTGT
CCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTACTGATTT
TGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGGGGA
CAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCTGAT
TCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAAGAAAAT
TATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAGCCG
ATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACATGAA
TTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCTGGC
CAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTATGA
TTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGTGAA
GGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATA
TGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAG
AGCTG
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