FC923251

Overview
NameFC923251
Unique NameFC923251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 1
Query:  199 FDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            FD +Q++           KAT   + GTT +   F  GV++AAD+R++ G  ++ ++  K+  I+P +    AG AAD +   + +G    LH L   R   V  A ++L   L+ Y+G  +    ++AG D TG  L+ + + G    G   S+GSGS  A  VL+S +K D++ EE
Sbjct:    6 FDNYQRNNFLAENSHTQPKAT---STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEE 179          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  235 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            K  KGTTT+     +GV++AAD RAS G +++++ V+K++ I   +  T AG  AD QF +  L      + +     IS+ G +  LAN+L + +     V  +I G+D+  P L+ +D  G   +    + GSGSP A GVL+  Y   M+++E
Sbjct:   10 KILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQ-PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDE 164          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++ ++   ++G AAD Q        +  LH +  +    V  A+ ++ NI Y YR   LS   M+AGWD+   G  Y    G  ++      GSGS Y YG +D+ YK  MS EE
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYR-EDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEE 170          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 1
Query:  202 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM  EE
Sbjct:   28 DFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEE 193          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  202 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L   R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM  EE
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEE 193          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  202 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L   R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM  EE
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEE 193          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    M+AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+ EE
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYR-EDLLAHLMVAGWDQHEGGQVY-GTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEE 170          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H +       V  A+ L+ NI Y Y+   LS   ++AGWD+ G G  YV +  G L    F+V GSGS Y YG +D+ Y+  MS E+
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYK-EDLSAHLIVAGWDKRGGGQVYV-TLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKED 168          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 48/152 (31.58%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K    ++GSGS  A  V +  ++ DM  EE
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEE 193          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV++ ADSR + G YI+++   K+  I+ ++    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+ +E
Sbjct:   33 GTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDE 184          
The following BLAST results are available for this feature:
BLAST of FC923251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSB7_YEAST8.866e-1632.02Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSMB_SULSO1.158e-1533.97Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB9_BOVIN3.369e-1534.21Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB7_BOVIN7.505e-1530.54Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_RAT1.280e-1430.54Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE1.280e-1430.54Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB9_RAT1.672e-1435.29Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_ONCMY1.672e-1433.99Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB7_HUMAN1.672e-1431.58Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB6_MOUSE1.672e-1433.33Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31702F10EF StrClemenN Citrus clementina cDNA clone C31702F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923251 ID=FC923251; Name=FC923251; organism=Citrus clementina; type=EST; length=705bp
GATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCTTAGCTA
CATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCGACACTA
GCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAGCTCTGT
CCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTACTGATTT
TGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGGGGA
CAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCTGAT
TCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAAGAAAAT
TATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAGCCG
ATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACATGAA
TTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCTGGC
CAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTATGA
TTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGTGAA
GGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATA
TGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAG
AGCTG
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