FC923251

Overview
NameFC923251
Unique NameFC923251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT  A  +K+GV++AADSR +MG YI+++   K+ ++   +    +G AAD Q     L     ++ +      SV  A+ L + + Y  + M LS G ++AG+DE   G  Y    GG L     ++ GSGS + YG  D+ ++ +M+ EE
Sbjct:   24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEE 175          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H L       V  A+ L+ NI Y Y+   LS   ++AGWD    G  +  + GG L    F++ GSGS Y YG +D+ Y+  M+ EE
Sbjct:   18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYK-EELSAHLIVAGWDRRDGGQVFA-TLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEE 168          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+ EE
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 170          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+ EE
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEE 170          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+ EE
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 170          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI--IEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            GTT +  ++K GV++ AD+RA+ G  ++ ++ +KI  I  N Y  G  AG AAD +     +  K +LH+L+  ++  V  A  +L  +L+ Y+G  +S   ++ G D  GP L+ +   G   +    ++GSGS  A  V ++ YK DM+ EE
Sbjct:   34 GTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCG--AGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQG-HISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEE 184          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 50/157 (31.85%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  235 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            K   GTT +A  + +GV++ ADSR SMG Y+SS+   K+ +I   +    +G +AD Q     L +   ++         V  A+ L + I+  Y    L  G ++AG+D+  P ++ + S GG L    +++ GSGS + YG  D  ++  MS+EE
Sbjct:    6 KEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKII--YENPSLLAGLIVAGYDDK-PRVFNI-SLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEE 158          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 47/159 (29.56%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  223 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIE 699
            +  L    GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M++E
Sbjct:   31 RVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLE 188          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  211 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK  ++ +E
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDE 189          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  238 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIE 699
            HA+  GTT    +F++GV++ AD+RA+    ++ +  +KI  I P +    AG AAD +   R       LH L+  R   V   +++L   L+ Y+G  +    ++ G D TGP LY V   G   +    ++GSG   A  VL+  ++ +M++E
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGY-VGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLE 188          
The following BLAST results are available for this feature:
BLAST of FC923251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSB6_SCHPO4.865e-1433.33Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB9_ORYLA6.354e-1432.68Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB9_MUSSI6.354e-1434.64Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB6.354e-1434.64Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MOUSE6.354e-1434.64Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSB7_DICDI1.084e-1333.12Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB6_ENCCU1.849e-1331.85Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSB10_RAT2.414e-1329.56Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB7B_ARATH3.153e-1332.93Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB10_BOVIN3.153e-1330.77Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC31702F10EF StrClemenN Citrus clementina cDNA clone C31702F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923251 ID=FC923251; Name=FC923251; organism=Citrus clementina; type=EST; length=705bp
GATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCTTAGCTA
CATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCGACACTA
GCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAGCTCTGT
CCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTACTGATTT
TGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGGGGA
CAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCTGAT
TCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAAGAAAAT
TATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAGCCG
ATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACATGAA
TTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCTGGC
CAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTATGA
TTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGTGAA
GGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATA
TGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAG
AGCTG
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