FC923251

Overview
NameFC923251
Unique NameFC923251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  211 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK  ++ +E
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDE 189          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  214 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            ++T     H+ GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L   + Y+ +   L  G +I GWD+   G  Y    GG +    F++ GSGS Y YG  D  +K  M+ EE
Sbjct:    2 ENTDVDQPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDR-LQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEE 164          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 48/156 (30.77%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  238 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIE 699
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M++E
Sbjct:   34 HARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLE 188          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  196 DFDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIEE 702
            DF+ +Q++           KAT   + GTT +  I K+ +++ AD+RA+ G  I+ ++ KK+  I+P +    AG AAD +F    +     LH L   R+  V  A  +L   L+ Y+G  +    ++ G+D  GP L+ + + G   K    ++GSGS  A  VL++ Y+ D+   E
Sbjct:   11 DFEYYQRNLLLQEKGFPTPKAT---STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQG-HIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHE 185          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GT+ +A  +  GV++ ADSR + G YI+++   KI  I+  +    +G AAD Q     +     +H         V  A+ L   + YS +   L  G ++AGWD+   G  Y  S GG +    F++ GSGS Y YG  DS +K  M+ +E
Sbjct:   14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKN-NLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDE 165          
BLAST of FC923251 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 45/153 (29.41%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  247 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIEE 702
            GT+ +A  FK+GV++ ADSR + G YI+++   K+  ++  +    +G AAD Q     +     L+        + T AS +   + Y  +   L+ G ++AG+D+   G  Y    GG +    +++ GSGS + YG  D  ++ +MS EE
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS-VFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEE 169          
The following BLAST results are available for this feature:
BLAST of FC923251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSB7A_ARATH4.118e-1332.93Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB6_TOBAC4.118e-1329.88Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB10_MOUSE4.118e-1330.77Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB7_SCHPO5.379e-1330.17Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB6_DICDI2.044e-1232.68Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_YEAST3.855e-1129.41Proteasome component PRE3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31702F10EF StrClemenN Citrus clementina cDNA clone C31702F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923251 ID=FC923251; Name=FC923251; organism=Citrus clementina; type=EST; length=705bp
GATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCTTAGCTA
CATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCGACACTA
GCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAGCTCTGT
CCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTACTGATTT
TGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGGGGA
CAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCTGAT
TCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAAGAAAAT
TATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAGCCG
ATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACATGAA
TTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCTGGC
CAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTATGA
TTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGTGAA
GGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATA
TGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAG
AGCTG
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