FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_AZOSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain BH72) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWF 575
            PL+G+  A KD+F  +G +T  G+   A     +   A  V  +   GA S+GKT MDE A   + E+ HYG   NPW   R+P             +LV  + G+DTGGSVR PAS+ G+ G +P++G VS  G+I  A S D  G F
Sbjct:   67 PLTGIPLAHKDLFCTEGVLTTCGSKMLA--DFVSPYDAHVVSRLKDAGAVSLGKTNMDEFAMGSSNESSHYGAVRNPWDTTRIPGGSSGGSAAAVAARLVPLATGSDTGGSVRQPASHTGVTGIKPTYGVVSRYGMIAYASSLDQGGAF 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NEIMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + Q ++SA    L+G+  A KDIF   G  +   +       S  T+T   V  +L  G  ++G+T MDE A     EN  YG   NPW P+ VP             +L   +LG+DTGGS+R PAS+CGI G +P++G+VS  G++  A SFD  G
Sbjct:   57 DERIAQGNASA----LTGIPVAYKDIFCQTGWRSACASKMLDNFISPYTATV--VQKLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 59/152 (38.82%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  123 QLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            +LP+ G+ F IKD+  V+G      +          T+TA  V  ++  GA  +GK   DE A   + EN  YG   NP A DRVP              +   +LGTDTGGS+R PAS+CG+ G  P++G VS  G+I  A S D VG FA
Sbjct:   66 KLPMGGVPFGIKDVLTVEGMPATASSKILEGYRPPYTATA--VQRLIDAGAVLVGKLNCDEFAMGSSNENSAYGPVKNPRALDRVPGGSSGGSAAAVAANMAVATLGTDTGGSIRQPASFCGVVGVLPTYGRVSRYGLIAFASSLDRVGPFA 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NEIG2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 58/161 (36.02%), Postives = 85/161 (52.80%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + Q ++SA    L+G+  A KDIF   G  +   +      +  +  TA  V  +L  G  ++G+T MDE A     EN  YG   NPW P+ VP             +L   +LG+DTGGS+R PAS+CGI G +P++G+VS  G++  A SFD  G
Sbjct:   57 DERIAQGNASA----LTGVPVAYKDIFCQTGWRSACASK--MLDNFVSPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NEIMF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + Q ++SA    L+G+  A KDIF   G  +   +       S  T+T   V  +L  G  ++G+T MDE A     EN  YG   NPW P+ VP             +L   +LG+DTGGS+R PAS+CGI G +P++G+VS  G++  A SFD  G
Sbjct:   57 DERIAQGNASA----LTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTATV--VQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_CHRSD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 60/156 (38.46%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  102 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            Q  +S     L+GL  A+KDIF   G  T  G+         A   A  V  +   G  S+GKT MDE A   + EN  YG   NPW    VP              LV  +LGTDTGGS+R PA++CGI G +P++G VS  G++  A S D  G
Sbjct:   58 QARASGDAAALAGLPLALKDIFCTQGVRTSCGSK--MLDSFVAPYDATVVEKIRQAGGVSLGKTNMDEFAMGSSNENSFYGPVKNPWDLSAVPGGSSGGSAAAVAAGLVPAALGTDTGGSIRQPAAFCGITGLKPTYGRVSRYGMVAYASSLDQGG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NITOC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 57/146 (39.04%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++G+  A KDIF   G  T  G+      +  A   A  V  + + GA  +GKT MDE A   + E   YG+  NPWA DRVP             +L   + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G
Sbjct:   68 ITGIPLAHKDIFCTTGVKTSCGSK--MLDNFTAPYNATVVSRLKTAGAVMLGKTNMDEFAMGSSNETSFYGSVKNPWAHDRVPGGSSGGSAAAVAARLTPAATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQGG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NEIG1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + Q ++SA    L+G+  A KDIF   G  +   +      +     TA  V  +L  G  ++G+T MDE A     EN  YG   NPW P+ VP             +L   +LG+DTGGS+R PAS+CGI G +P++G+VS  G++  A SFD  G
Sbjct:   57 DERIAQGNASA----LTGVPVAYKDIFCQTGWRSACASK--MLDNFIFPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_LEGPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 56/150 (37.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            PL+G+  A+KD+F      T   +   A   +   +T   V      GA  IGKT MDE A   + EN ++G+  NPW  +RV               LV F++G+DTGGS+R PA++CGI G +P++G VS  G++  A S D  G FA
Sbjct:   66 PLTGIPMALKDLFCTKRLNTTCASKMLANFQAPYDATI--VTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVSGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFA 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_MARMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp. (strain MWYL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 66/190 (34.74%), Postives = 93/190 (48.95%), Query Frame = 3
Query:   30 TLLTVAKMASRDSDYGAFM---EKLVLQPSSSAHQL-------PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T L +A++A  D    +F+   E+  L+ +++A  L        L+G+  A KD+F  +G +T  G+           ST  +   +   GA  +GKT MDE A   + EN  YG   NPW  D VP              L   + GTDTGGS+R PAS+CGI G +P++G VS  G+I  A S D  G
Sbjct:   24 TRLFLARIAKLDPQLNSFITVSEQHALEQAAAADVLLQSGKGTSLTGIPVAHKDLFCTEGTLTTCGSKMLHNFVPPYESTVTS--RIQQAGAVMLGKTNMDEFAMGSSNENSFYGAVKNPWNLDMVPGGSSGGSAAAIAAGLAVAATGTDTGGSIRQPASFCGITGLKPTYGRVSRFGMIAYASSLDQGG 211          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_AZOSB4.192e-2138.93Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_NEIMA5.475e-2136.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_ACIC55.475e-2138.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_NEIG27.151e-2136.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NEIMF9.339e-2136.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CHRSD9.339e-2138.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_NITOC2.081e-2039.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NEIG12.081e-2036.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_LEGPH2.081e-2037.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_MARMS2.717e-2034.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
back to top