FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 3
Query:   66 SDYGAFM----EKLV-----LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            SD  AF+    EK++     L+ + +    PL G   A+K   +V G+     +      +   T  A  V  + S GA  +G T MDE A   +GE  ++G   NP A DR+P              L   ++G+DTGGS+R PAS+CGI GF+PS+G VS  G+  +A SFD +G
Sbjct:   16 SDVNAFIDVNSEKVLKEAEELEKNDALKNKPLYGKIVAVKSNINVKGYKISCASK--TLDNYIGTYDATVVKKLRSQGALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  120 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            H+ PL+G+  AIKD   V G     G+             A  +  +L  GA  +GKT +DE A   + E  +YG   NPW  +RVP                 F+LG+DTGGSVR PA++CG+ G +P++G+VS  GV+  A S + VG
Sbjct:   58 HEGPLAGVPIAIKDNISVVGLPNSCGSK--ILEGYVPPFNAHVIEKLLDAGAVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVG 205          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 63/177 (35.59%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   66 SDYGAFM----EKLV-----LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            SD  AF+    EK++     L+ + +    PL G   A+K   +V G+     +    +     T  A  V  + S GA  +G T MDE A   +GE   YG   NP A DR+P              L   ++G+DTGGS+R PAS+CGI GF+PS+G VS  G+  +A SFD +G
Sbjct:   16 SDVNAFIDVNGEKVLKEAEELEKNDTLKNKPLYGKIVAVKSNINVKGYKISCASKTLEKY--VGTYDATVVKKLRSQGALIVGMTNMDEFAGGSSGETSCYGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_PROMT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 64/164 (39.02%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            E +  Q +S  H  PLSG+  AIKD     G  T   +           ST    L  L+ GA  IGKT MDE A   + E   +G   NPW   +VP              L   SLG+DTGGS+R PAS+CG+ G +P++G VS  G+I  A S D VG FA
Sbjct:   51 EHIDKQIASGDHLPPLSGIPIAIKDNLCTKGIKTTCASKILDNFVPPYESTVTKKL--LNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFA 212          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_PROM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 64/164 (39.02%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            E +  Q +S  H  PLSG+  AIKD     G  T   +           ST    L  L+ GA  IGKT MDE A   + E   +G   NPW   +VP              L   SLG+DTGGS+R PAS+CG+ G +P++G VS  G+I  A S D VG FA
Sbjct:   51 EHIDKQIASGDHLPPLSGIPIAIKDNLCTKGIKTTCASKILDNFVPPYESTVTKKL--LNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFA 212          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METBF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 60/174 (34.48%), Postives = 85/174 (48.85%), Query Frame = 3
Query:   57 SRDSDYGAFMEKLVLQPSS---SAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            S+ + Y    EK + Q        H  PL+G+  AIKD   V G     G+             A  +  +L+ GA  +GKT MDE A   + E  ++G   NPW  +RVP                 F+LG+DTGGSVR PA++CG+ G +P++G+VS  GV+  A S + VG
Sbjct:   33 SKVNGYITVSEKALEQAKKIDVEGHNGPLAGVPIAIKDNISVVGLPNSCGSK--ILEDYIPPFNAYVIEKLLAAGAVILGKTNMDEFAMGSSTETSYFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVG 204          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DEIGD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus geothermalis (strain DSM 11300) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  126 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            LPL+G+   +KD  +V G  T  G+   A   S   +TA  V  +   GA  IGK  MDE A   + E+  +G   NPW  +RVP              L   +LG+DTGGSVR PA++ GI+G +P++G VS  G++  A S D +G FA
Sbjct:   65 LPLAGVPIVVKDNLNVIGTRTTCGSRILANYVSPYDATA--VERLTGAGAVIIGKANMDEFAMGSSTESSAWGPTLNPWDRERVPGGSSGGSAVAVAANLTPVALGSDTGGSVRQPAAFTGIYGLKPTYGRVSRYGLVAYASSLDQIGPFA 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 56/152 (36.84%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWD 584
            PL+G+  A+KD+    G  T   +      +      A  V  +   GA  +GKT MDE A   + EN  Y T  NPW  D+VP                 FSLG+DTGGS+R PAS+C + G++PS+G VS  G++  A S D +G F  D
Sbjct:   70 PLTGIPMALKDVLCTKGIRTTCSSK--MLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 56/152 (36.84%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWD 584
            PL+G+  A+KD+    G  T   +      +      A  V  +   GA  +GKT MDE A   + EN  Y T  NPW  D+VP                 FSLG+DTGGS+R PAS+C + G++PS+G VS  G++  A S D +G F  D
Sbjct:   70 PLTGIPMALKDVLCTKGIRTTCSSK--MLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_THET8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gatA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 62/172 (36.05%), Postives = 88/172 (51.16%), Query Frame = 3
Query:   63 DSDYGAFM---EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            D   GAF+   E+L+ +  +    LPL+GL  A+KD     G  T  G+           +TA A L  L  GA  +GKT +DE     + E+  +    NP+ PDRVP              L   +LG+DTGGSVR PA++CG++G +P++G VS  G+I  A S D +G
Sbjct:   32 DPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKAL--GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIG 201          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_METM73.549e-2035.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METAC3.549e-2036.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METMP4.635e-2035.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_PROMT6.053e-2039.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM16.053e-2039.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METBF6.053e-2034.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEIGD6.053e-2038.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEHSC6.053e-2036.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEHSB6.053e-2036.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_THET87.906e-2036.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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