FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_THET2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 62/172 (36.05%), Postives = 88/172 (51.16%), Query Frame = 3
Query:   63 DSDYGAFM---EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            D   GAF+   E+L+ +  +    LPL+GL  A+KD     G  T  G+           +TA A L  L  GA  +GKT +DE     + E+  +    NP+ PDRVP              L   +LG+DTGGSVR PA++CG++G +P++G VS  G+I  A S D +G
Sbjct:   32 DPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKAL--GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIG 201          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 63/177 (35.59%), Postives = 87/177 (49.15%), Query Frame = 3
Query:   66 SDYGAFM----EKLV-----LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            SD  AF+    EK++     L+ +      PL G   A+K   +V G+     +    +     T  A  V  + S GA  +G T MDE A   +GE   YG   NP A DR+P              L   ++G+DTGGS+R PAS+CGI GF+PS+G VS  G+  +A SFD +G
Sbjct:   16 SDVNAFIDVNSEKVLKEAEELEKNDDLKNKPLYGKIVAVKSNINVKGYKISCASKTLEKY--VGTYDATVVKKLRSQGALIVGMTNMDEFAGGSSGETSCYGPTKNPAALDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_AKKM8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 57/167 (34.13%), Postives = 84/167 (50.30%), Query Frame = 3
Query:   72 YGAFMEKLVLQPSSSAH-QLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            Y +F  +  L  ++ A    PL+G+  A+KD  +V G  T   +     +   A   A ++  +   G   +G+T MDE A   +GEN  YG   NP APDR+P                  +LG+DTGGS+R PA +CGI G +P++G VS  G++  A S D +G
Sbjct:   42 YISFDREAALHAAAGADISSPLAGIPIAVKDNINVLGQPTRCASR--LLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIG 206          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METVS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 3
Query:   99 LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+ +       L G   A+K   +V+G+     +      +   T  A  +  + S GA  IG T MDE A   +GE  +YG   NP A DR+P              L   +LG+DTGGS+R PAS+CG+ GF+P++G VS  G+  +A SFD +G
Sbjct:   36 LEKNEKLKNKSLYGKIIAVKSNINVEGYKISCASK--TLDNYTGTYDATVIKKLRSEGALIIGMTNMDEFASGSSGETSYYGPTKNPKALDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPTYGVVSRQGLCDLAMSFDQIG 190          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DICNV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dichelobacter nodosus (strain VCS1703A) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  114 SAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            +AH  PL G+    KD+F   G  T  G+    R   + T+T  A L   + G+   GK  MDE A   + E  ++G   NPW   R+P             +L+ ++ G+DTGGSVR PA+YCGI G +P++G+ S  G+I  A S D  G  A
Sbjct:   67 AAHS-PLDGIPMGHKDLFCTKGIATTAGSKMLERFIPSYTATVVARLE--AAGSVLTGKLSMDEFAMGSSNERSYFGAVYNPWDEQRIPGGSSGGSAAAVAARLIPYATGSDTGGSVRQPAAYCGITGIKPTYGTCSRWGMIAYASSLDQAGVLA 218          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_THIDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 62/185 (33.51%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQL-PDDASLVRPSRVIFAEDL 680
            PL+G+  A KDIF  DG +T  G+   A  +  A   A  +    + G  S+GKT MDE A   + E   +G   NPW    VP             ++   + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G  A   +   R+  V+    P D++ +   +  +  DL
Sbjct:   67 PLTGVPIAHKDIFCTDGWLTTCGSKMLA--NFVAPYDAHVIERCKAAGMPSLGKTNMDEFAMGSSNETSFFGAVKNPWNAGYVPGGSSGGAAACVAARMAPAATGTDTGGSIRQPAALCGITGLKPTYGLVSRYGMIAFASSLDQAGPMAPSAEDCARLLNVITGFDPKDSTSLEREKEDYTRDL 249          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_PARUW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Protochlamydia amoebophila (strain UWE25) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 63/185 (34.05%), Postives = 88/185 (47.57%), Query Frame = 3
Query:   48 KMASRDSDYGAFMEKLVLQPSSSAHQLP-----------LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++A  D   GAF+     Q    A QL            L+G+  AIKD   V G ++  G+     T+  +   A  +  +L+ GA  IGKT MDE A   + EN      +NPW     P             +L   SLG+DTGGSVR PAS+CG+ GF+P++G VS  G++    S D +G
Sbjct:   30 RIAKYDQKIGAFLSVYEEQAMMQAKQLDQKRLANQPLGKLAGIPIAIKDNILVKGEISTCGSK--FLTNFKSPYQASVIEYLLAEGAVIIGKTNMDEFAMGSSTENSALQKTSNPWNLKCTPGGSSGGSAAAVAGRLSPLSLGSDTGGSVRLPASFCGVVGFKPTYGRVSRFGLVAYGSSLDQIG 212          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NEIMB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup B GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + Q ++SA    L+G+  A KDIF   G  +   +       S  T+T   V  +L  G  ++G+T MDE A     EN  YG   NPW  + VP             +L   +LG+DTGGS+R PAS+CGI G +P++G+VS  G++  A SFD  G
Sbjct:   57 DERIAQGNASA----LTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTATV--VQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQTG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 63/190 (33.16%), Postives = 86/190 (45.26%), Query Frame = 3
Query:   84 MEKLVLQPSSSAHQL------------PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVL 617
            M+KL   P  S H              PLSG+T A+KD     G  T   +             A  V  + + GA  +GKT MDE       EN  YG   NP    RVP              LV  ++G+DTGGS+R PA++CGI G +P++G VS  G+I  A S + +G  A D + L+ +  V+
Sbjct:    1 MKKLTFHPDDSVHAFITTIPEVTYGDGPLSGVTVAVKDNISTKGIETTCASK--ILKGYIPPYDAHVVTLLKNAGAAIVGKTNMDEFGMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCGIVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVI 188          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DEIDV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 58/151 (38.41%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  126 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            LPL+G+   +KD  +V G  T  G+   A   S  T+TA   L  +  GA  +GK  MDE A   + E+   G   NPW   RVP              L   SLG+DTGGSVR PA+  G++G +P++G VS  G++  A S D +G FA
Sbjct:   65 LPLAGVPVIVKDNINVSGTRTTCGSRILATYVSPYTATAAQRL--IDAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDLSRVPGGSSGGSAVAVAANLTPVSLGSDTGGSVRQPAALTGVYGLKPTYGRVSRYGLVAYASSLDQIGPFA 213          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_THET27.906e-2036.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_METM57.906e-2035.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_AKKM87.906e-2034.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METVS1.033e-1935.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DICNV1.033e-1936.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_THIDA1.349e-1933.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PARUW1.349e-1934.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NEIMB1.349e-1936.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METHJ1.349e-1933.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEIDV1.349e-1938.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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