FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_SALRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinibacter ruber (strain DSM 13855) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+GL  A+KD   + G+    G+   A   S   +T   +  +   GA  IGKT  DE A   + E  H+G   NP AP+ VP              L   +LG+DTGGSVR PA++CG  G +P++G VS +G++  A S D +G
Sbjct:   67 PLAGLVLAVKDNICIRGYPVSCGSKMLADFSSLYDATV--IDRLRDAGAIFIGKTNCDEFAMGSSNETSHFGPVRNPHAPEYVPGGSSGGSAAAVAAGLCHAALGSDTGGSVRQPAAFCGTVGLKPTYGRVSRSGLVAFASSLDVIG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_PROM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9515) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 59/162 (36.42%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   84 MEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++KL+   S++    PL+G+  AIKD     G VT   +       S   ST    L   S G   +GKT +DE A   + E   +GT +NPW   RVP              L   S+G+DTGGS+R PAS+CG+ G +P++G VS  G+I  A S D +G
Sbjct:   53 IDKLI---SNNEQLPPLAGIPIAIKDNICTKGVVTSCSSKMLQDFVSPYESTVSGKL--WSSGGIFLGKTNLDEFAMGSSTETSVFGTTSNPWDTKRVPGGSSGGSAASVAAGLCAASIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQIG 209          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_PELCD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 3
Query:   42 VAKMASRDSDYGAFM---EKLVLQPSSSA-------HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            + ++A  D   GAF+   E+  L+ + +A       +   L+G+  A+KDIF  +G  T   +      +     +  AV  +    A  +GK  MDE A   + EN  +GT  NPW  D VP             +    +LGTDTGGS+R PAS+CG+ G +P++G VS  GVI  A S D VG
Sbjct:   30 LTRIADTDQRIGAFITQSEEAALKNAEAADARLAAGNAASLTGIPLALKDIFITEGMRTTCASR--ILDNFVPPYSGTAVRKLQEQDAVILGKLNMDEFAMGSSNENSAFGTVKNPWNQDCVPGGSSGGSAACVAARQAVATLGTDTGGSIRQPASHCGVVGLKPTYGRVSRYGVIAYASSLDQVG 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_HAHCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Hahella chejuensis (strain KCTC 2396) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            L+G+  A KD+F  +G  T  G+    +      ST       +  GA ++GKT MDE A   + EN ++G   NPW  +R P              L   + GTDTGGS+R PA++CG+ G +P++G VS  G++  A S D  G FA
Sbjct:   68 LNGVPLAHKDVFCTEGVTTTCGSRMLEKFVPPYESTVTRKF--IDAGAVTLGKTNMDEFAMGSSNENSYFGPVRNPWDTERAPGGSSGGSAAAVAAGLCAAATGTDTGGSIRQPAAFCGLTGLKPTYGRVSRLGMVAFASSLDQGGPFA 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_EUBE2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+ FAIKD    +G +T   +      +   T TA AV  + + GA  IGKT MDE A     E   +G   NP  P+ VP                  +LG+DTGGS+R PASYCG+ G +P++G+VS  G+I    S D +G
Sbjct:   70 PLAGVPFAIKDNMCTEGMLTTCSSKILG--NFVPTYTADAVERLQNAGAVIIGKTNMDEFAMGSTTETSAFGATKNPRNPEHVPGGSSGGSAAAVAANECFAALGSDTGGSIRQPASYCGVVGLKPTYGTVSRYGLIAYGSSLDQIG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DESAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   30 TLLTVAKMASRDSDYGAFME---KLVLQPSSSAHQ-------LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T   + ++ + D+D GAF+       L+ +++A +        PL G+  A+KD+    G  T   +      +   T  A AV  +   GA  +GKT +DE     + EN  +    NPW  D VP             ++   +LGTDTGGS+R PAS+CG+ G +PS+G VS  G++  A S D +G
Sbjct:   26 TTCLLDRIKTHDADLGAFITVDAAGALEAATAADERIARGEDAPLLGIPLALKDLLCTSGVRTTCASK--ILENFVPTYDATAVTLLKQAGAVIVGKTNLDEFGMGSSTENSAFHLTRNPWNLDHVPGGSSGGSAAAVAARMCTAALGTDTGGSIRQPASHCGVVGLKPSYGRVSRFGMVAYASSLDQIG 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_RALEH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 55/147 (37.41%), Postives = 74/147 (50.34%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KD+F   G     G+   A   S   +T    +A  + G  ++GKT MDE A   + EN H+G   NPW   RVP              L   + GTDTGGS+R P+S+ GI G +P++G VS  G+I  A S D  G
Sbjct:   71 PLTGVPIAHKDVFVTRGWRATAGSKMLANYESPFDATVVERMA--AAGMVTLGKTNMDEFAMGSSNENSHFGPVRNPWDTSRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPSSFSGITGIKPTYGRVSRYGMIAFASSLDQAG 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METM6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/177 (34.46%), Postives = 87/177 (49.15%), Query Frame = 3
Query:   66 SDYGAFM----EKLV-----LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            SD  AF+    EK++     L+ +      PL G   A+K   +V G+     +    +     T  A  V  +   GA  +G T MDE A   +GE  ++G   NP A DR+P              L   ++G+DTGGS+R PAS+CGI GF+PS+G VS  G+  +A SFD +G
Sbjct:   16 SDVNAFIDVNSEKVLKEAEELEKNDYLKNKPLYGKIVAVKSNINVKGYKISCASKTLEKY--TGTYDATVVKKLRLQGALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_COXBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/177 (34.46%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   39 TVAKMASRDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T+    S   +Y     K      +      L+G+  A KDIF      T  G+      +  A   A  V  +   GA  IGKT MDE A   + EN ++G   NPW  +RVP             +LV  + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G
Sbjct:   37 TLNSFISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK--MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_COXBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/177 (34.46%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   39 TVAKMASRDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T+    S   +Y     K      +      L+G+  A KDIF      T  G+      +  A   A  V  +   GA  IGKT MDE A   + EN ++G   NPW  +RVP             +LV  + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G
Sbjct:   37 TLNSFISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK--MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAG 211          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_SALRD1.761e-1936.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROM51.761e-1936.42Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PELCD1.761e-1933.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_HAHCH1.761e-1935.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_EUBE21.761e-1938.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_DESAH1.761e-1931.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_RALEH2.300e-1937.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METM63.004e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_COXBU3.004e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXBR3.004e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
back to top