FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BIFLO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 3 
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNP---DWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  AIKD+    G  T   +     W   + A       +  + + G   +GKT +DE A   + E+  Y T  NPW  +RVP                  +LGTDTGGS+R P +  G  G +P++G VS  G I MA S D +G
Sbjct:   77 LAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATV-----IEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIG 220
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BIFLI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 3 
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNP---DWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  AIKD+    G  T   +     W   + A       +  + + G   +GKT +DE A   + E+  Y T  NPW  +RVP                  +LGTDTGGS+R P +  G  G +P++G VS  G I MA S D +G
Sbjct:   77 LAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATV-----IEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIG 220
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BIFLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum (strain DJO10A) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 3 
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNP---DWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  AIKD+    G  T   +     W   + A       +  + + G   +GKT +DE A   + E+  Y T  NPW  +RVP                  +LGTDTGGS+R P +  G  G +P++G VS  G I MA S D +G
Sbjct:   77 LAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATV-----IEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIG 220
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain MW2) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain MSSA476) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain MRSA252) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain Newman) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain COL) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
[Close]
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E  ++    NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BIFLO2.228e-1432.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BIFLI2.228e-1432.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BIFLD2.228e-1432.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_STAAW2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAT2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAS2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAR2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAE2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAC2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAB2.910e-1440.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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