FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_GRABC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 52/157 (33.12%), Postives = 72/157 (45.86%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGN---PDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDR-----VPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            L+G+  A KD+F  +G  T  G+    ++   + +A +       +L  GA  +GK  +DE A         YG   NPW         VP              L   + GTDTGGS+R PASYCGI G +P++G  S  G++  A S D  G FA
Sbjct:   71 LTGIPVASKDMFCSEGIRTTAGSRILENFVPPYESAVTER-----MLRDGAVILGKANLDEFAMGSANLTSAYGPVENPWKRHDDDAVLVPGGSSGGSAAAVAAHLALGATGTDTGGSIRQPASYCGIAGIKPTYGRCSRWGIVAYASSLDQAGPFA 222          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_CAMC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter concisus (strain 13826) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 52/177 (29.38%), Postives = 79/177 (44.63%), Query Frame = 3
Query:   60 RDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSA-------ATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + GA++E+L     +   +    G+  AIKD   V G         W+ T ++       A   A  +  +LS      G+T MDE A     E+  YG   NP     VP              L   +LG+DTGGS+R PA++CG  G +P++G VS  G+   + S D +G
Sbjct:   28 KEKELGAYVEQLANLEIAKLGE----GVPIAIKDNIQVKG---------WSVTSASKILQGYVAPYNATVIEKLLSKNLAPFGRTNMDEFAMGSTTESSFYGKTLNPLNHAHVPGGSSGGSAAAVAAGLAVAALGSDTGGSIRQPAAFCGCVGLKPTYGRVSRYGLGAYSSSLDQIG 191          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BREBN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  282 IGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            + K  MDE A   + EN  +    NPW  D VP             +   ++LG+DTGGS+R PA++CG+ G +P++G VS  G++  A S D +G
Sbjct:  120 VAKLNMDEFAMGGSNENSGFFPAKNPWNTDYVPGGSSGGSAAAMAARHFYYTLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIG 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STAAU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 40/99 (40.40%), Postives = 52/99 (52.53%), Query Frame = 3
Query:  273 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            A  IGK  MDE A   + E        NP+    VP              LV FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSISKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_HELPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori J99 GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 57/176 (32.39%), Postives = 76/176 (43.18%), Query Frame = 3
Query:   60 RDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSA-------ATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTV 566
            R SD  A+++   L  +S+       G+   IKD   V G         W  T S+       A   A A+  +   G    G + MDE A     E+  YG   NP   + VP              L   +LG+DTGGS+R PASYCG  G +P++G VS  GVI    SFD +
Sbjct:   27 RASDLNAYIKAPSLNGASA------KGVPILIKDNISVKG---------WEITCSSKILEGYVAPYHASAIENLHQNGMAGFGLSNMDEFAMGSTTESSCYGITKNPRDKNIVPGGSSGGSAAAVAGGLTVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGVIAYRSSFDQI 187          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_EHRRG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Gardel) GN=gatA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 50/150 (33.33%), Postives = 68/150 (45.33%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDR----VPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+   IKD+F      T   +           ST   V  ++  GA  +GK  MDE A   +  N  +G   NPW        VP              L   +LG+DTGGSVR PA++CGI G +P++G  S +G+I  A S D  G
Sbjct:   71 LTGIPVGIKDLFCTKNIKTTACSNILRNFTPQYDSTV--VKRLIDDGAVMLGKLNMDEFAMGSSNSNSCFGPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAAFCGIVGLKPTYGRCSRSGMIAFASSLDQAG 218          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_COREF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium efficiens GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 39/100 (39.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query:  270 GATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            G   +GKT MDE A   + EN  YG   NPW  +R P                  ++GTDTGGS+R PA+     G +P++G+VS  G+I  A S D VG
Sbjct:  127 GIPILGKTNMDEFAMGSSTENSAYGATRNPWDLERTPGGSGGGSSAALASGEAPLAIGTDTGGSIRQPAALTNTVGVKPTYGTVSRYGLIACASSLDQVG 226          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: AMI4_MYCTU (Putative amidase amiD OS=Mycobacterium tuberculosis GN=amiD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 51/146 (34.93%), Postives = 67/146 (45.89%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L G+   +KD+       T  G   +     A  +T  A L   + GA  IGK  M E AY   G +    TP NPW P                  L   S+G+DTGGS+R P S CG+ G +P+ G VS  GV+ +A S+D VG
Sbjct:   85 LHGVPIGVKDLCYTVDAPTAAGTTIFRDFRPAYDATVVARLR--AAGAVIIGKLAMTEGAYL--GYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSDTGGSIRFPTSMCGVTGIKPTWGRVSRHGVVELAASYDHVG 226          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: AMI4_MYCBO (Putative amidase amiD OS=Mycobacterium bovis GN=amiD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 51/146 (34.93%), Postives = 67/146 (45.89%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L G+   +KD+       T  G   +     A  +T  A L   + GA  IGK  M E AY   G +    TP NPW P                  L   S+G+DTGGS+R P S CG+ G +P+ G VS  GV+ +A S+D VG
Sbjct:   85 LHGVPIGVKDLCYTVDAPTAAGTTIFRDFRPAYDATVVARLR--AAGAVIIGKLAMTEGAYL--GYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSDTGGSIRFPTSMCGVTGIKPTWGRVSRHGVVELAASYDHVG 226          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_RICBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia bellii (strain RML369-C) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 53/170 (31.18%), Postives = 73/170 (42.94%), Query Frame = 3
Query:  102 QPSSSAHQLPLSGLTFAIKDIFDVDG-HVTGFGN------PDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPW-----APDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWF 575
            Q  +  H   L G+ FA KD+F   G   T   N      P++    S  T        + + G   +GKT MDE A         +G   +PW       D VP              +   +LG+DTGGSVR PAS+ G+ GF+P++G  S  G++  A S D  G F
Sbjct:   60 QSYAKNHSRTLEGIPFAAKDLFCTKGIRTTACSNILREFIPNY---ESGVTQN------IFNKGGVMLGKTNMDEFAMGSANITSCFGNVISPWKALDDGADLVPGGSSGGSAAAVSGFMATAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAGIF 220          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_GRABC3.217e-1333.12Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_CAMC13.217e-1329.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BREBN3.217e-1336.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_STAAU4.202e-1340.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_HELPJ4.202e-1332.39Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_EHRRG4.202e-1333.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_COREF4.202e-1339.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
AMI4_MYCTU4.202e-1334.93Putative amidase amiD OS=Mycobacterium tuberculosi... [more]
AMI4_MYCBO4.202e-1334.93Putative amidase amiD OS=Mycobacterium bovis GN=am... [more]
GATA_RICBR5.488e-1331.18Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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