FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_COXBN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/177 (34.46%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   39 TVAKMASRDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T+    S   +Y     K      +      L+G+  A KDIF      T  G+      +  A   A  V  +   GA  IGKT MDE A   + EN ++G   NPW  +RVP             +LV  + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G
Sbjct:   37 TLNSFISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK--MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_COXB2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuG_Q212) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/177 (34.46%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   39 TVAKMASRDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T+    S   +Y     K      +      L+G+  A KDIF      T  G+      +  A   A  V  +   GA  IGKT MDE A   + EN ++G   NPW  +RVP             +LV  + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G
Sbjct:   37 TLNSFISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK--MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_COXB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuK_Q154) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/177 (34.46%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   39 TVAKMASRDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            T+    S   +Y     K      +      L+G+  A KDIF      T  G+      +  A   A  V  +   GA  IGKT MDE A   + EN ++G   NPW  +RVP             +LV  + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G
Sbjct:   37 TLNSFISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK--MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_CHLAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 56/151 (37.09%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAW 581
            PL G+   IKD+   +G  T  G+   A       +T   +  +L+ G   IGK   DE A   + EN  Y   TNPW   RVP               V  +LGTDTGGS+R PA+ CGI G +P++G VS  G+I    S D +G  AW
Sbjct:   71 PLDGIPIGIKDVICTNGVPTTAGSRILAGFRPPYNATV--IERLLAAGTVLIGKLNCDEFAMGSSTENSAYQITTNPWDTSRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAW 219          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BORPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/147 (37.41%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KD F   G  T  G+        A+   A  V  + + GA S+GK   DE A     EN  YG   NPW P+ VP             +LV  + GTDTGGSVR PA+ CG+ G +P++G+VS  G++    S D  G
Sbjct:   73 PLAGVPIAHKDAFVTRGWRTTAGSK--MLEGYASPFDATVVQRLQAAGAVSLGKLNCDEFAMGSANENSAYGPVRNPWDPNAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIVAFGSSLDQAG 217          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIBY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AYE) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ + G  +NPWA D VP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPYDATV--VEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gatA PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ + G  +NPWA D VP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPYDATV--VEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain SDF) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ + G  +NPWA D VP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPYDATV--VEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIBC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ACICU) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ + G  +NPWA D VP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPYDATV--VEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIB5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB0057) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ + G  +NPWA D VP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPYDATV--VEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAG 214          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_COXBN3.004e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB23.004e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB13.004e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAD3.004e-1937.09Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BORPD3.004e-1937.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ACIBY3.004e-1937.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBT3.004e-1937.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBS3.004e-1937.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBC3.004e-1937.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB53.004e-1937.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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