FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIB3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB307-0294) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ + G  +NPWA D VP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPYDATV--VEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ACIAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter sp. (strain ADP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 56/146 (38.36%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+  A KDIF   G  T  G+       S   +T   V    + G  ++GK  MDE A     E+ ++G   NPWA DRVP              L  F+ GTDTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G
Sbjct:   71 LTGVPLAHKDIFCTKGIKTTAGSKMLDNFISPYNATV--VEKANAAGLVTLGKLNMDEFAMGSTSESSYFGATCNPWALDRVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGMIAYASSLDQGG 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_EUBR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 59/172 (34.30%), Postives = 85/172 (49.42%), Query Frame = 3
Query:   75 GAFMEKLVLQPSSSAHQLP--LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWD 584
            GA  +   +Q    A +L   L+G+  AIKD    +G +T   +      +   T TA AV  +   G   +GKT MDE A     E   +G   NPW  + VP             + V F+LG+DTGGS+R P+S+CG+ G +P++G+VS  G+I    S D +G  A D
Sbjct:   50 GALKKAAEVQAKIDAGELKGALAGVPVAIKDNMCTEGLLTTCSSK--ILYNFIPTYTAEAVKRLEDAGCVIVGKTNMDEFAMGSTTETSAFGATKNPWNTEHVPGGSSGGSCAAVAAEEVPFALGSDTGGSIRQPSSFCGVTGIKPTYGTVSRYGLIAYGSSLDQIGPIAKD 219          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BORPE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella pertussis GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KD F   G  T  G+   A   S   +T    LA    GA S+GK   DE A     EN  YG   NPW    VP             +LV  + GTDTGGSVR PA+ CG+ G +P++G+VS  G+I    S D  G
Sbjct:   73 PLAGIPIAHKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLA--EAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIIAFGSSLDQAG 217          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_RALME (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KD+F   G  +  G+   A   S   +T    LA  + G  ++GKT MDE A   + EN  +G  +NPW   RVP              L   + GTDTGGS+R PAS+ GI G +P++G VS  G+I  A S D  G
Sbjct:   71 PLTGVPIAHKDVFVTRGWKSTAGSKMLANYESPFDATVVERLA--AAGMVTLGKTNMDEFAMGSSNENSFFGPVSNPWDTSRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGG 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_PSYWF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter sp. (strain PRwf-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 56/148 (37.84%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWF 575
            L GL  A KD+F   G +T  G+       S   +T   V  +   GA  +GK  MDE A   + E+ +YG   NPW   RVP               V F+ G+DTGGS+R PAS+CG+ G +P++G VS  G+I  A S D  G F
Sbjct:   71 LLGLPMAHKDLFCTKGLLTTSGSKILHNFVSPYDATI--VSNIREAGAVCLGKLNMDEFAMGSDNESSYYGAVHNPWDLSRVPGGSSGGSAAAVAAGFVPFATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGTF 216          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWD 584
            L+GL   IK   +V+  +    +P     + +  +T   +  +L      IG T MDE A   + E   YG   NP AP  +P              +   +LG+DTGGS+R PAS+CG+ GF+P++G VS  G++ +A S D +G FA D
Sbjct:   66 LAGLVIGIKSNINVEDFIISAASPTLKNYYGSYNATV--INRILDEDGVIIGLTNMDEFAAGSSTETSMYGPTNNPKAPGHIPGGSSGGSAAAIAANMCDITLGSDTGGSIRNPASHCGVMGFKPTYGMVSRQGLLDLAMSLDQIGPFAND 214          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanocaldococcus jannaschii GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   99 LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+    A + PL G    +K   +V+G+     +      +  A   A  +  +   G   IG   MDE A   +GE  ++G   NP A DR+P              L   +LG+DTGGS+R PAS+CG+ GF+PS+G VS  G+  +A SFD +G
Sbjct:   38 LEKDEKAKKKPLYGKIIVVKANINVEGYTISCASK--TLENYIAPYDATVIEKIKENGGLIIGIANMDEFACGSSGETSYFGPTKNPRAKDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPSYGVVSRYGLCDLAMSFDQIG 192          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 55/152 (36.18%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWD 584
            PL G+  AIKD    DG  T   +      +      A  V  +   GA  +GKT +DE A   + EN  +    NPW  +RVP                 FSLG+DTGGS+R PA++CG+ G +P++G+VS  G+I  A S D +G F  D
Sbjct:   70 PLEGIPMAIKDNMCTDGVRTTCSSK--ILNNFVPPYDATVVTKLKEAGAVMMGKTNLDEFAMGSSTENSGFFATCNPWDIERVPGGSSGGSAASVAAGQAVFSLGSDTGGSIRQPAAFCGVVGLKPTYGAVSRFGLIAFASSLDQIGPFTRD 219          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_GEOLS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 62/184 (33.70%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   48 KMASRDSDYGAFM----EKLVLQPSSSAHQL------PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ S D    AF+    E+ +L  +++  ++      PL+G+  A+KDIF  +G  T   +      +  A   A A   + S GA  +GK   DE A   + EN  +G   NPW  D +P             +    +LGTDTGGS+R PAS+CG  G +P++G VS  GVI  A S D VG
Sbjct:   32 RIESTDQSINAFITVTKEQALLDAAAADQRIAAGNCAPLTGIPVALKDIFLTEGVRTTSASK--MLDNFIAPYDATAWTRMKSQGAVLLGKLNQDEFAMGSSCENSAFGPTRNPWNKDHIPGGSSGGSAAAIAAQQAVATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVG 213          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIB33.004e-1937.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIAD3.004e-1938.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_EUBR33.924e-1934.30Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_BORPE3.924e-1938.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_RALME5.125e-1938.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSYWF5.125e-1937.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METST5.125e-1933.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METJA5.125e-1933.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HELMI5.125e-1936.18Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GEOLS6.693e-1933.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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