FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 55/147 (37.41%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+GL  A KD+F   G  +  G+   A   S   +T  A L   + G  ++GKT MDE A   + EN  +G   NPW  + VP             +L   + GTDTGGS+R PAS+ G+ G +P++G VS  G+I  A S D  G
Sbjct:   66 PLTGLPIAHKDVFVTRGWRSTAGSKMLANYESPFDATVVARLQ--AAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+GL  A KD+F   G  +  G+   A   S   +T  A L+  + G  ++GKT MDE A   + EN  +G   NPW  + VP             +L   + GTDTGGS+R PAS+ G+ G +P++G VS  G+I  A S D  G
Sbjct:   66 PLAGLPIAHKDVFVTRGWRSTAGSKMLANYASPFDATVVARLS--AAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BDEBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            L+G+ F IK++F   G  T  G+      +      A AV  +   G   +GK   DE A   + E   +G   NPW  +RVP             +LV  +LGTDTGGS+R PAS+CGI G +P++G VS  G++  A S D  G
Sbjct:   70 LAGVPFGIKEMFCTKGLTTTAGSK--ILENFVPPYDATAVARLKKSGIVVMGKLNQDEFAMGSSNETSFHGVVKNPWDLERVPGGSSGGSAAAQASRLVAGTLGTDTGGSIRQPASFCGIVGVKPTYGRVSRYGIVAYASSLDQAG 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_CUPTR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 55/147 (37.41%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KD+F   G     G+       S   +T    +A  + G  ++GKT MDE A   + EN H+G   NPW   RVP              L   + GTDTGGS+R PAS+ GI G +P++G VS  G+I  A S D  G
Sbjct:   71 PLTGVPVAHKDVFVTRGWRATAGSKMLGNYESPFDATVVERMA--AAGMVTLGKTNMDEFAMGSSNENSHFGPVRNPWDAGRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGG 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURXL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia xenovorans (strain LB400) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 56/152 (36.84%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  114 SAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            + H  PL GL  A KD+F   G  +  G+   +   S   +T  A L   + G   +GKT MDE A   + EN ++G   NPW    VP             +L   + GTDTGGS+R PAS+ GI G +P++G VS  G+I  A S D  G
Sbjct:   61 TGHAGPLVGLPIAHKDVFVTKGWRSTAGSKMLSNYESPFDATVVARLQ--NAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 55/147 (37.41%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+GL  A KD+F   G  +  G+   A   S   +T  A L+  + G  ++GKT MDE A   + EN  +G   NPW    VP             +L   + GTDTGGS+R PAS+ G+ G +P++G VS  G+I  A S D  G
Sbjct:   66 PLAGLPIAHKDVFVTRGWRSTAGSKMLANYASPFDATVVARLS--AAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 56/152 (36.84%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  114 SAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            + H  PL GL  A KD+F   G  +  G+   +   S   +T  A L   + G   +GKT MDE A   + EN ++G   NPW    VP             +L   + GTDTGGS+R PAS+ GI G +P++G VS  G+I  A S D  G
Sbjct:   61 TGHAGPLVGLPIAHKDVFVTKGWRSTAGSKMLSNYESPFDATVVARLQ--NAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1710b) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 55/147 (37.41%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+GL  A KD+F   G  +  G+   A   S   +T  A L+  + G  ++GKT MDE A   + EN  +G   NPW    VP             +L   + GTDTGGS+R PAS+ G+ G +P++G VS  G+I  A S D  G
Sbjct:   66 PLAGLPIAHKDVFVTRGWRSTAGSKMLANYASPFDATVVARLS--AAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BURP0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1106a) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 55/147 (37.41%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+GL  A KD+F   G  +  G+   A   S   +T  A L+  + G  ++GKT MDE A   + EN  +G   NPW    VP             +L   + GTDTGGS+R PAS+ G+ G +P++G VS  G+I  A S D  G
Sbjct:   66 PLAGLPIAHKDVFVTRGWRSTAGSKMLANYASPFDATVVARLS--AAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGG 210          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_BORPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella parapertussis GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 57/147 (38.78%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KD F   G  T  G+   A   S   +T    LA    GA S+GK   DE A     EN  YG   NPW    VP             +LV  + GTDTGGSVR PA+ CG+ G +P++G+VS  G+I    S D  G
Sbjct:   73 PLAGIPIAHKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLA--EAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTRAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAG 217          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURM16.693e-1937.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURTA8.741e-1937.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BDEBA8.741e-1936.30Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_CUPTR1.142e-1837.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURXL1.142e-1836.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURPS1.142e-1837.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURPP1.142e-1836.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP11.142e-1837.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP01.142e-1837.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BORPA1.142e-1838.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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