FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STRP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain 70585) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            LSG+  A+KD    DG +T   +           +TA  V    + G   +GKT MDE A   +GE  HYG   N W   +VP               V  SLG+DTGGS+R PA++ GI G +P++G+VS  G+I    S D +G FA
Sbjct:   69 LSGIPLAVKDNISTDGILTTAASKMLYNYEPIFDATA--VANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STRP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            LSG+  A+KD    DG +T   +           +TA  V    + G   +GKT MDE A   +GE  HYG   N W   +VP               V  SLG+DTGGS+R PA++ GI G +P++G+VS  G+I    S D +G FA
Sbjct:   69 LSGIPLAVKDNISTDGILTTAASKMLYNYEPIFDATA--VANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_STRP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  132 LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            LSG+  A+KD    DG +T   +           +TA  V    + G   +GKT MDE A   +GE  HYG   N W   +VP               V  SLG+DTGGS+R PA++ GI G +P++G+VS  G+I    S D +G FA
Sbjct:   69 LSGIPLAVKDNISTDGILTTAASKMLYNYEPIFDATA--VANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METFK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 54/147 (36.73%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A KDIF   G  T  G+      +  A   A  +    + GA ++GKT MDE A   + E  ++G   NPW   RVP             +L   + GTDTGGS+R PAS CG+ G +P++G  S  G+I  A S D  G
Sbjct:   67 PLTGIPIAQKDIFCAKGWRTTCGSR--MLENFIAPYDAGIIERFNAAGAVNLGKTNMDEFAMGSSNETSYFGKVQNPWDRSRVPGGSSGGSAAAVAARLCAAATGTDTGGSIRQPASLCGLSGLKPTYGLASRYGMIAFASSLDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NATPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 56/166 (33.73%), Postives = 80/166 (48.19%), Query Frame = 3
Query:   72 YGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            + AF+ +  ++P+      PL G+T A+KD    DG  T  G+   A         A  V  +   GAT +GKT MDE       E   +G   NP A  RVP                  +LG+DTGGSVR PA++CG+ G +P++G VS  G++  A S + +G
Sbjct:    3 HNAFITEETIEPTDDG---PLDGVTVAVKDNISTDGVRTTCGSEMLA--DYVPPYDATVVERLRDAGATIVGKTNMDEFGMGTTTETSAFGPTENPAAEGRVPGGSSGGSAAAVAAGDADLALGSDTGGSVRCPAAFCGVVGIKPTYGLVSRYGLVAYANSLEQIG 163          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_MORCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moraxella catarrhalis GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 58/173 (33.53%), Postives = 82/173 (47.40%), Query Frame = 3
Query:   57 SRDSDYGAFMEKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWF 575
            ++D D      KL  +  +     PL G+  A KD     G +T  G+       S   +T   V ++ + G  S+GK  MDE A   + E+ ++G   NPW   RVP               V  + G+DTGGS+R PAS+CGI G +P++G VS  G+I  A S D  G F
Sbjct:   46 TKDFDNALAQAKLADKLRAKGDNRPLLGVPMAHKDNLCTKGVLTTAGSKMLYNFVSPYDATV--VDSIANSGFVSLGKLNMDEFAMGSDNESSYFGAVHNPWDVQRVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGITGIKPTYGRVSRYGMIAYASSLDQAGTF 216          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_LYSSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lysinibacillus sphaericus (strain C3-41) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   48 KMASRDSDYGAFMEKLVLQPSSSAHQL---------PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++A  D D  AF+     + ++ A ++         PL GL   +KD    +G  T   +           +T   V  +   G  ++GK  MDE A   + EN +Y T  NPW  + VP               V FSLG+DTGGS+R PA+YCG+ G +P++G VS  G++  A S D +G
Sbjct:   32 RIAKLDGDVQAFLASNEEKATAQAAEMDKVPFEERGPLFGLPIGVKDNIVTEGLETTCASKILEGFMPIYDATV--VNKLREAGMITVGKLNMDEFAMGSSNENSYYKTTKNPWNLNHVPGGSSGASAASVAAGEVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 212          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 56/147 (38.10%), Postives = 72/147 (48.98%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            PL+G+  A+KDIF   G  T   +            TA A L     GA  +GK   DE A   +GE+  +G   NPW  + +P             +    +LGTDTGGS+R PAS+CG  G RP++G VS  GVI  A S D VG
Sbjct:   69 PLTGIPVALKDIFVTKGIRTTCASKILDNFVPPYDGTAVAKLK--EAGAVIVGKLNQDEFAMGSSGESSAFGPTRNPWNLECIPGGSSSGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLRPTYGRVSRYGVIAYASSLDQVG 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_ALCBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 60/154 (38.96%), Postives = 78/154 (50.65%), Query Frame = 3
Query:  108 SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            SSS   L L+GL  A KDIF  +G  T  G+      +  A  TA  V  + + GA  +GKT MDE A   + E  +YG   NPW  +RVP             +L   + GTDTGGS+R PA+   I G +P++G VS  G+I  A S D  G
Sbjct:   66 SSSVSGL-LTGLPIAHKDIFCTEGVRTSCGSK--MLDNFIAPYTATVVEKMAAEGAVMLGKTNMDEFAMGSSNETSYYGPVKNPWDLERVPGGSSGGAAACLGARLAPAATGTDTGGSIRQPAALNNITGLKPTYGRVSRWGMIAFASSLDQAG 216          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_THISH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 67/194 (34.54%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVL--LQLPDDASLVRPSRVIFAEDLLALSSIPV 704
            PL+G+  A KDIF  DG  T  G+      +  A   A  V    + G   +GKT MDE A   + E   +G   NPW   RVP             +L   + GTDTGGS+R PA+ CGI G +P++G VS  G+I  A S D  G  A   +    +  V+      D  S+ RP     AED  A  + P+
Sbjct:   67 PLTGVPMAQKDIFCTDGVRTTCGSK--MLDNFIAPYDATVVERFKAEGCPMLGKTNMDEFAMGSSNETSFHGPVKNPWDTARVPGGSSGGSAAAVAARLTPSATGTDTGGSIRQPAALCGITGLKPTYGRVSRWGMIAFASSLDQGGPMAATAEDCALLANVMSGFDPRDSTSIERP-----AEDFTARLNEPL 253          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRP71.491e-1836.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP41.491e-1836.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP21.491e-1836.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METFK1.491e-1836.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_NATPD1.947e-1833.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MORCA1.947e-1833.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LYSSC1.947e-1831.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_GEOMG1.947e-1838.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_ALCBS1.947e-1838.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THISH2.543e-1834.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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