FC923255 | Citrus Genome Database

Overview


Name	FC923255
Unique Name	FC923255
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	745

Libraries


Library Name	Type
StrClemenN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHEPC (Adenylyl-sulfate kinase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=cysC PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.996e-13
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            ++RD  R+  P G FIEV +  PL VCE RDPKGLY  AR G++
Sbjct:  109 EERDGIRARFPAGQFIEVHVSTPLSVCEQRDPKGLYVKARSGEI 152

HSP 2 Score: 38.891 bits (89), Expect = 7.996e-13
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL +DL F  EDR EN+RR+ ++
Sbjct:   61 DNVRHGLCKDLGFTVEDRDENLRRVGEV 88

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHISS (Adenylyl-sulfate kinase OS=Shigella sonnei (strain Ss046) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHIFL (Adenylyl-sulfate kinase OS=Shigella flexneri GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHIF8 (Adenylyl-sulfate kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHIDS (Adenylyl-sulfate kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHIBS (Adenylyl-sulfate kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHIB3 (Adenylyl-sulfate kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ESCF3 (Adenylyl-sulfate kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOUT (Adenylyl-sulfate kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOSM (Adenylyl-sulfate kinase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

The following BLAST results are available for this feature:

BLAST of FC923255 vs. ExPASy Swiss-Prot

BLAST of FC923255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
CYSC_SHEPC	7.996e-13	54.55	Adenylyl-sulfate kinase OS=Shewanella putrefaciens...	[more]
CYSC_SHISS	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Shigella sonnei (strain...	[more]
CYSC_SHIFL	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Shigella flexneri GN=cy...	[more]
CYSC_SHIF8	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Shigella flexneri serot...	[more]
CYSC_SHIDS	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Shigella dysenteriae se...	[more]
CYSC_SHIBS	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Shigella boydii serotyp...	[more]
CYSC_SHIB3	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Shigella boydii serotyp...	[more]
CYSC_ESCF3	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia fergusonii ...	[more]
CYSC_ECOUT	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]
CYSC_ECOSM	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31702G02EF StrClemenN Citrus clementina cDNA clone C31702G02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC923255 ID=FC923255; Name=FC923255; organism=Citrus clementina; type=EST; length=745bp
GACAACTGCCGGCATGGACTGAACCGTGATCTAAGTTTTAAGGCAGAAGA
TCGTGTGGAAAACATACGCAGGATTGAAAAGATCGAGATGCCTGCCGTTC
AATGTTGCCAGAAGGAGATTTCATTGAGGTGTTCATGGATGTGCCACTTC
AAGTGTGTGAGGCAAGGGACCCAAAGGGCCTTTACAAGCTTGCACGAGAA
GGGAAGGTTTTACTGGGATTGATGATCCATATGAACCACCATTAAACTGT
GAGATAGTACTAAAACAGACGGGAGATGACTGTCCTTCACCGGCTGATAT
GGTTGAAACTGTGGTATCTTACCTGGATGATAATGGCTTCCTGCGGGCCT
AATTTGAAGAGAAAGGTCTCAGCTCTTGGTTTCCATTGCCTTTGGTCACC
TGCAATACTTTGAGGTATCGACAAAAATCATGGTACGATCCAGTAAGGAA
ACTGATTGTTTCCTGCATCTGTAGCGACAATAAATGTCTGGCACTTTAAT
TACTCGATCGAGTAGTTGACGTCAGTGCCAAGCAAGTTGCATAGCGTTTC
GCGTCTTTAATTCAGGTTTGTTTTGGAATAAGTTATATGTTCATAGGGTT
GGGGATCGATGTAAATCAGTGTCATGCAGCATTAGAATAAAAGTTGTCTC
AGGTTTGCAAATTTCGATTGTACACGTACCCAACCCCGGCATCTTTGTAT
TACCATATTTGTGATAAGGAGCCAAGCTCTTACAGGCGTCTCATT